Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1318
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   7.7  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   7.7  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 470 ISKQPKSAIFTTVYIFTVISLEKVKRL 390
           +SK  +S  F T+Y  T++S EKV+ L
Sbjct: 121 LSKPEESYNFLTIYFSTLLSYEKVENL 147


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +2

Query: 557 TFIVLYYFYLQC--FILNSITLF---SIALLTLYERSLIYYIPYFL 679
           ++++LYYF+L      + S+T F   S  +LTL    L+ +  YFL
Sbjct: 346 SYLILYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLVEF-RYFL 390


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 550 LGNIYCTILFLSTMLYTELYNAFFYCPFDALRTXPY 657
           LG   CT++  S + Y  ++  +F CP   L T  +
Sbjct: 247 LGGWICTVVIGSLISYVLMHFKYFICPTRDLSTSAF 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,589
Number of Sequences: 5004
Number of extensions: 48036
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)