BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1318 (683 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 29 3.4 10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 28 7.9 03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 7.9 >03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573, 12346712-12347567,12347760-12347883,12348469-12348688, 12348771-12349229,12349318-12349519 Length = 1302 Score = 29.1 bits (62), Expect = 3.4 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%) Frame = +2 Query: 605 SITLFSIALL-TLYERSLIYYIPYFLY 682 ++TLF I +L TL++ +++Y+P+F Y Sbjct: 1145 NLTLFWITMLDTLWQSLVLFYVPFFTY 1171 >10_08_0553 - 18720436-18720494,18721102-18721106,18721136-18721257, 18721390-18721478,18722136-18722316,18722403-18722654, 18722755-18722993,18723680-18723914,18724072-18724132, 18724632-18724987 Length = 532 Score = 27.9 bits (59), Expect = 7.9 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Frame = -3 Query: 441 YNCVYIYSDFIREG*TFVFFFFENKLYCRLPNNKLFFKSFYLKMI*TLST----K*VICY 274 Y+C YI++ +++ VF F N L LF + ++ + + K Y Sbjct: 409 YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETY 468 Query: 273 FWTICWNQSFCLSNN 229 IC+ FCL N Sbjct: 469 LHRICYTYGFCLFTN 483 >03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380, 11965971-11966083,11966179-11966234,11966320-11966417, 11966588-11966725,11966820-11967125,11967208-11967471, 11967587-11967754,11967838-11968056,11968115-11968158, 11968761-11968830,11968949-11969110,11969672-11969779, 11969873-11969910,11970121-11970265,11970800-11970926, 11971037-11971230,11971529-11971659,11972014-11972089, 11972218-11972328,11972465-11972647,11973264-11973407, 11973946-11973969,11974555-11974728,11974808-11975155, 11975232-11975561,11975776-11975961,11976052-11977026, 11977145-11977399 Length = 1852 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 446 IFTTVYIFTVISLEKVKRLCFFFLRTNFIVGY 351 +FT ++ + E K +CF FL T +VGY Sbjct: 552 LFTFYHVDLQMKPEAPKPVCFLFLITKVVVGY 583 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,319,673 Number of Sequences: 37544 Number of extensions: 227723 Number of successful extensions: 360 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 359 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1733104716 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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