Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1318
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    29   3.4  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    28   7.9  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    28   7.9  

>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 605  SITLFSIALL-TLYERSLIYYIPYFLY 682
            ++TLF I +L TL++  +++Y+P+F Y
Sbjct: 1145 NLTLFWITMLDTLWQSLVLFYVPFFTY 1171


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -3

Query: 441 YNCVYIYSDFIREG*TFVFFFFENKLYCRLPNNKLFFKSFYLKMI*TLST----K*VICY 274
           Y+C YI++  +++    VF  F N     L    LF +   ++ +  +      K    Y
Sbjct: 409 YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETY 468

Query: 273 FWTICWNQSFCLSNN 229
              IC+   FCL  N
Sbjct: 469 LHRICYTYGFCLFTN 483


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 446 IFTTVYIFTVISLEKVKRLCFFFLRTNFIVGY 351
           +FT  ++   +  E  K +CF FL T  +VGY
Sbjct: 552 LFTFYHVDLQMKPEAPKPVCFLFLITKVVVGY 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,673
Number of Sequences: 37544
Number of extensions: 227723
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)