Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1318
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical p...    32   0.33 
Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL132872-2|CAB60761.2|  119|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81139-8|CAB03483.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 563 IVLYYFYLQCFILNSITLFSIALLTLYERSL-IYYIPYF 676
           I+   FY+ CF L +I+L+ +  + ++ R+L I YIP F
Sbjct: 34  IIELVFYISCFHLMTISLYVMLKVQIFHRNLYILYIPMF 72


>Z81062-15|CAB02950.2|  361|Caenorhabditis elegans Hypothetical
           protein W05H5.7 protein.
          Length = 361

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 563 IVLYYFYLQCFILNSITLFSIALLTLYERSL-IYYIPYF 676
           I+   FY+ CF L +I+L+ +  + ++ R+L I YIP F
Sbjct: 34  IIELVFYISCFHLMTISLYVMLKVQIFHRNLYILYIPMF 72


>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 517 GYFKIYLFVQILGNIYCTILFLSTMLYTELYNAFFYCPFDALRTXP 654
           G+F+     Q++ ++  T++ +S +L   L+N  F C   A+ T P
Sbjct: 81  GHFECLSNGQLIASVTVTVVPISKVLVNGLFNYLFVCAIFAVATIP 126


>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +1

Query: 520 YFKIYLFVQILGNIYCTIL-----FLSTMLYTELYNAFFYCPFDAL-RTXPYLLYPL 672
           +F  YLFV  +  I CT+      F S  L  E+Y   F   F  L    PYL Y +
Sbjct: 213 FFSHYLFVMAVFPIICTLTIVLDSFNSNFLLREIYQIIFDLSFTLLCFLAPYLTYKM 269


>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 569 LYYFYLQCFILNSITLFSIALLTLYERSLIYYI 667
           LY F L  F+L  ITL ++ LLT+    L+Y+I
Sbjct: 5   LYDFPLWFFVLEGITLLALLLLTIVS-FLLYFI 36


>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 580 LSTMLYTELYNAFFYCPFDALRTXPYLL 663
           +S  LY +    FF CP D LR  P+ L
Sbjct: 131 VSLDLYKKEIQGFFSCPVDNLRASPFFL 158


>AL132872-2|CAB60761.2|  119|Caenorhabditis elegans Hypothetical
           protein Y116F11A.3 protein.
          Length = 119

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 435 SCKYCRFRLFGNLTI*RCKNLTSITIDRLLQNIPFCPNF 551
           +C YC   +FG L     + L  I+ +RL+    FCPN+
Sbjct: 28  ACNYCGQMVFGLLLQNDVETL--ISTNRLVSKYNFCPNY 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,389
Number of Sequences: 27780
Number of extensions: 263079
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)