Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1318
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39490.1 68415.m04846 F-box family protein  ; similar to SKP1...    31   0.71 
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    28   6.6  
At1g48840.1 68414.m05468 expressed protein contains Pfam profile...    27   8.8  

>At2g39490.1 68415.m04846 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 387

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 453 FRLFGNLTI*RCKNLTSITID---RLLQ-NIPFCPNFR 554
           F L  +L I RCK LTS+TID   +LL  +I  CP  R
Sbjct: 163 FSLLDSLKICRCKRLTSLTIDSPTKLLHLSISGCPKLR 200


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1240

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -3

Query: 414 FIREG*TFVFFFFENKLYCRLPNNKLFFKSFYLKMI*TLSTK*VICYFWTICWNQSFC 241
           FI     F+F    N L     NNK F ++    ++  L    V C  W IC+ + +C
Sbjct: 47  FITPVVVFIFNTLLNNLGTSSSNNKTFMQTISKNVVALLY---VACGSWVICFLEGYC 101


>At1g48840.1 68414.m05468 expressed protein contains Pfam profile:
           PF04842 plant protein of unknown function (DUF639)
          Length = 691

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -2

Query: 517 LSIVIEVKFLHRYIVKF 467
           L+I++EV ++HRYI KF
Sbjct: 325 LAIILEVLYVHRYIKKF 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,004
Number of Sequences: 28952
Number of extensions: 216263
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)