BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1318 (683 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g39490.1 68415.m04846 F-box family protein ; similar to SKP1... 31 0.71 At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 28 6.6 At1g48840.1 68414.m05468 expressed protein contains Pfam profile... 27 8.8 >At2g39490.1 68415.m04846 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 387 Score = 31.1 bits (67), Expect = 0.71 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Frame = +3 Query: 453 FRLFGNLTI*RCKNLTSITID---RLLQ-NIPFCPNFR 554 F L +L I RCK LTS+TID +LL +I CP R Sbjct: 163 FSLLDSLKICRCKRLTSLTIDSPTKLLHLSISGCPKLR 200 >At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-glycoprotein homologue GI:2292907 from [Hordeum vulgare subsp. vulgare] Length = 1240 Score = 27.9 bits (59), Expect = 6.6 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = -3 Query: 414 FIREG*TFVFFFFENKLYCRLPNNKLFFKSFYLKMI*TLSTK*VICYFWTICWNQSFC 241 FI F+F N L NNK F ++ ++ L V C W IC+ + +C Sbjct: 47 FITPVVVFIFNTLLNNLGTSSSNNKTFMQTISKNVVALLY---VACGSWVICFLEGYC 101 >At1g48840.1 68414.m05468 expressed protein contains Pfam profile: PF04842 plant protein of unknown function (DUF639) Length = 691 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -2 Query: 517 LSIVIEVKFLHRYIVKF 467 L+I++EV ++HRYI KF Sbjct: 325 LAIILEVLYVHRYIKKF 341 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,849,004 Number of Sequences: 28952 Number of extensions: 216263 Number of successful extensions: 393 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 393 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1447936096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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