Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1317
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    29   0.13 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   0.51 
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.7  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    24   6.3  

>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCSK 33
           C  CK  GH    C  +L                   KC  CG  G I + CS+
Sbjct: 89  CHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE 142


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
 Frame = -3

Query: 227 PSAEKPX*XRYCVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIR 48
           PS+  P     C  C   GH    CRT                   N+ CY CG+ G   
Sbjct: 74  PSSPNPRQGAECYKCGRVGHIARDCRT-----NGQQSGGRFGGHRSNMNCYACGSYGHQA 128

Query: 47  SNCS---KCSS 24
            +C+   KC S
Sbjct: 129 RDCTMGVKCYS 139


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 278 CRSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSY 174
           C+S   P   G N   T S  +P   ++  Y K Y
Sbjct: 61  CKSRIPPCLKGKNGKTTKSESEPMSQKHLKYVKKY 95


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 74  GCGASGVIRSNCSKCSSNFSAVDF 3
           G   +GV+R+NC  C    +A  F
Sbjct: 419 GTFQTGVVRTNCVDCLDRTNAAQF 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,068
Number of Sequences: 5004
Number of extensions: 11861
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)