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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1317
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76...    31   0.19 
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    28   1.3  
10_06_0145 + 11215895-11216860                                         27   2.3  
07_01_0083 - 629819-630260,631695-631838,632906-633186                 27   3.1  
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    27   4.1  
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745...    26   5.4  
12_02_0227 - 15894357-15894494,15894587-15894655,15894837-158949...    26   7.1  
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158...    26   7.1  
01_04_0090 - 15940935-15941438                                         26   7.1  
12_01_0442 + 3495333-3496484                                           25   9.4  
05_05_0182 - 23045837-23046026,23046112-23046306,23046852-230470...    25   9.4  
02_04_0200 + 20866188-20866251,20866327-20867201                       25   9.4  
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333...    25   9.4  
01_01_0341 - 2734509-2735522                                           25   9.4  

>05_01_0112 -
           757514-758444,758525-758571,759074-759236,759861-760366
          Length = 548

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 290 TYGRCRSFPAPTSSGDNA--DATPSAEKPX*XRYCVYCKSYGHTRDQC 153
           +YG   + P+ TS G+ A  D  P   K    R C  C   GH   +C
Sbjct: 496 SYGGSSTIPSATSDGNKASDDTNPVPAKKKKRRTCYECGIAGHLASEC 543


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 83  KCYGCGASGVIRSNCSKCSSNFS 15
           KCY CG  G I  NC     N S
Sbjct: 172 KCYRCGERGHIERNCQNSPRNLS 194


>10_06_0145 + 11215895-11216860
          Length = 321

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 272 SFPAPTSSGDNADATPSAEKP 210
           S P+PTSS   A ATP A +P
Sbjct: 260 SSPSPTSSNQAATATPPAPRP 280


>07_01_0083 - 629819-630260,631695-631838,632906-633186
          Length = 288

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 211 GFSADGVASALSPDDVGAGK 270
           G SADG AS+ S DD   GK
Sbjct: 66  GSSADGAASSCSTDDADGGK 85


>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 83  KCYGCGASGVIRSNCSKCSSN 21
           KCY CG  G I  NC     N
Sbjct: 125 KCYRCGERGHIERNCQNSPRN 145


>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
            19974533-19974645,19977436-19977903,19977935-19978059,
            19978192-19978452,19984254-19984647
          Length = 1216

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 227  PSAEKPX*XRYCVYCKSYGHTRDQCR 150
            PSAE+    RYC +  S  HT + C+
Sbjct: 924  PSAEELGKKRYCKWHNSGSHTTNDCK 949


>12_02_0227 -
           15894357-15894494,15894587-15894655,15894837-15894902,
           15895130-15895219,15895312-15895408,15896449-15896771
          Length = 260

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 83  KCYGCGASGVIRSNCSKCSS 24
           +C+ CGASG   S C  C S
Sbjct: 74  ECWSCGASGAFLS-CGSCGS 92


>07_03_1520 +
           27415266-27415507,27415608-27415722,27415761-27415815,
           27415862-27417849,27418161-27418589
          Length = 942

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 311 PARIAACTYGRCRSFPAP 258
           PA +AA T  RC++ PAP
Sbjct: 4   PAAVAAATGRRCKAAPAP 21


>01_04_0090 - 15940935-15941438
          Length = 167

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 258 WRGETSTAAVGTRCDAGRG 314
           WR  T+      RCDA RG
Sbjct: 130 WRDSTNVGCARVRCDANRG 148


>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 316 PPRPASQRVPTAAVEVSPRQRRQAI 242
           PP+PAS +  T A    P+++R  +
Sbjct: 225 PPQPASPKTKTKAKAKKPKRKRSCV 249


>05_05_0182 -
           23045837-23046026,23046112-23046306,23046852-23047094,
           23047456-23047496,23047703-23047813,23047965-23048216,
           23048508-23048657,23048760-23048778,23049129-23049688
          Length = 586

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 13  ALKFELHLEQLERMTPLAPQP 75
           AL+   H+E  ER  P+AP+P
Sbjct: 166 ALRSRRHMEHRERHCPVAPRP 186


>02_04_0200 + 20866188-20866251,20866327-20867201
          Length = 312

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 200 RYCVYCKSYGHTRDQC 153
           R C +CK  GH  D C
Sbjct: 223 RICSHCKKVGHISDDC 238


>02_04_0003 +
           18832467-18832543,18832627-18832849,18832985-18833375,
           18833766-18834223,18834320-18834607,18834679-18835398
          Length = 718

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 200 RYCVYCKSYGHTRDQC 153
           RYC  C  +GH R+ C
Sbjct: 693 RYCKLCGGHGHYRNTC 708


>01_01_0341 - 2734509-2735522
          Length = 337

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 200 RYCVYCKSYGHTRDQC 153
           R C +CK  GH  D C
Sbjct: 248 RICSHCKKVGHISDDC 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,434,452
Number of Sequences: 37544
Number of extensions: 88285
Number of successful extensions: 428
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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