Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1317
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 31 0.19
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 28 1.3
10_06_0145 + 11215895-11216860 27 2.3
07_01_0083 - 629819-630260,631695-631838,632906-633186 27 3.1
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 27 4.1
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 26 5.4
12_02_0227 - 15894357-15894494,15894587-15894655,15894837-158949... 26 7.1
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158... 26 7.1
01_04_0090 - 15940935-15941438 26 7.1
12_01_0442 + 3495333-3496484 25 9.4
05_05_0182 - 23045837-23046026,23046112-23046306,23046852-230470... 25 9.4
02_04_0200 + 20866188-20866251,20866327-20867201 25 9.4
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 25 9.4
01_01_0341 - 2734509-2735522 25 9.4
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -3
Query: 290 TYGRCRSFPAPTSSGDNA--DATPSAEKPX*XRYCVYCKSYGHTRDQC 153
+YG + P+ TS G+ A D P K R C C GH +C
Sbjct: 496 SYGGSSTIPSATSDGNKASDDTNPVPAKKKKRRTCYECGIAGHLASEC 543
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 83 KCYGCGASGVIRSNCSKCSSNFS 15
KCY CG G I NC N S
Sbjct: 172 KCYRCGERGHIERNCQNSPRNLS 194
>10_06_0145 + 11215895-11216860
Length = 321
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 272 SFPAPTSSGDNADATPSAEKP 210
S P+PTSS A ATP A +P
Sbjct: 260 SSPSPTSSNQAATATPPAPRP 280
>07_01_0083 - 629819-630260,631695-631838,632906-633186
Length = 288
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 211 GFSADGVASALSPDDVGAGK 270
G SADG AS+ S DD GK
Sbjct: 66 GSSADGAASSCSTDDADGGK 85
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 83 KCYGCGASGVIRSNCSKCSSN 21
KCY CG G I NC N
Sbjct: 125 KCYRCGERGHIERNCQNSPRN 145
>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 227 PSAEKPX*XRYCVYCKSYGHTRDQCR 150
PSAE+ RYC + S HT + C+
Sbjct: 924 PSAEELGKKRYCKWHNSGSHTTNDCK 949
>12_02_0227 -
15894357-15894494,15894587-15894655,15894837-15894902,
15895130-15895219,15895312-15895408,15896449-15896771
Length = 260
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 83 KCYGCGASGVIRSNCSKCSS 24
+C+ CGASG S C C S
Sbjct: 74 ECWSCGASGAFLS-CGSCGS 92
>07_03_1520 +
27415266-27415507,27415608-27415722,27415761-27415815,
27415862-27417849,27418161-27418589
Length = 942
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 311 PARIAACTYGRCRSFPAP 258
PA +AA T RC++ PAP
Sbjct: 4 PAAVAAATGRRCKAAPAP 21
>01_04_0090 - 15940935-15941438
Length = 167
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 258 WRGETSTAAVGTRCDAGRG 314
WR T+ RCDA RG
Sbjct: 130 WRDSTNVGCARVRCDANRG 148
>12_01_0442 + 3495333-3496484
Length = 383
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 316 PPRPASQRVPTAAVEVSPRQRRQAI 242
PP+PAS + T A P+++R +
Sbjct: 225 PPQPASPKTKTKAKAKKPKRKRSCV 249
>05_05_0182 -
23045837-23046026,23046112-23046306,23046852-23047094,
23047456-23047496,23047703-23047813,23047965-23048216,
23048508-23048657,23048760-23048778,23049129-23049688
Length = 586
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 13 ALKFELHLEQLERMTPLAPQP 75
AL+ H+E ER P+AP+P
Sbjct: 166 ALRSRRHMEHRERHCPVAPRP 186
>02_04_0200 + 20866188-20866251,20866327-20867201
Length = 312
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 200 RYCVYCKSYGHTRDQC 153
R C +CK GH D C
Sbjct: 223 RICSHCKKVGHISDDC 238
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 200 RYCVYCKSYGHTRDQC 153
RYC C +GH R+ C
Sbjct: 693 RYCKLCGGHGHYRNTC 708
>01_01_0341 - 2734509-2735522
Length = 337
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 200 RYCVYCKSYGHTRDQC 153
R C +CK GH D C
Sbjct: 248 RICSHCKKVGHISDDC 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,434,452
Number of Sequences: 37544
Number of extensions: 88285
Number of successful extensions: 428
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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