Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1317
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)                   28   1.4  
SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)                28   1.8  
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)                 27   3.2  
SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   3.2  
SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         26   7.4  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             26   7.4  
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)             25   9.8  

>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
          Length = 448

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 152 DTDHAYDRNFY---NKHSIDXXWVF 217
           D D  YDR+FY   NK +++  WVF
Sbjct: 420 DNDDDYDRDFYDNENKDNVNTIWVF 444


>SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)
          Length = 256

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 197 YCVYCKSYGHTRDQC 153
           YC+ C  +GHTR +C
Sbjct: 108 YCMECSDFGHTRRKC 122


>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
          Length = 249

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 27  TTFGTIRTYDSARAATVTFNIIYFTNYVIVTXIRGLF**QCTTLITRMTVTFTINTVSTL 206
           T   TI T  +   AT+T  I   T ++  T    +     TT+ T  T+T T  T+ T+
Sbjct: 161 TITATITTITTTITATITTTISTTTPFITATISTTI----TTTITTTTTITTTTTTIYTI 216


>SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 27  TTFGTIRTYDSARAATVTFNIIYFTNYVIVTXIRGLF**QCTTLITRMTVTFTINTVSTL 206
           T   TI T  +   AT+T  I   T ++  T    +     TT+ T  T+T T  T+ T+
Sbjct: 20  TITATITTITTTITATITTTISTTTPFITATISTTI----TTTITTTTTITTTTTTIYTI 75


>SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCRTL 144
           C +C  +GHT+  CR L
Sbjct: 85  CHHCHKFGHTKRDCREL 101


>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1626

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRS-----NCSKC 30
           CVYC    H    C  +L   TA               CY C   G + +     NC+KC
Sbjct: 273 CVYCSDKSHKSKDCTKVL--DTASRREILMQKKL----CYNCTKGGHMATKCKAGNCAKC 326

Query: 29  SS 24
           +S
Sbjct: 327 NS 328


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCRTL 144
           C YCK  GH +++C  L
Sbjct: 270 CCYCKKDGHIKEKCPDL 286


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 83  KCYGCGASGVIRSNC 39
           KCY CG +G IR +C
Sbjct: 141 KCYKCGNTGHIRRDC 155


>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
          Length = 535

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 310 RPASQRVPTAAVEVSPRQRRQ 248
           RP  Q VPTA +  SP +RR+
Sbjct: 327 RPGEQFVPTAELGSSPNKRRR 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,483,396
Number of Sequences: 59808
Number of extensions: 103896
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)