Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1317
(316 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 31 0.54
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 31 0.71
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 31 0.71
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 31 0.71
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 31 0.71
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 31 0.71
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 31 0.71
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 31 0.71
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 31 0.71
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 31 0.71
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 31 0.71
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 31 0.71
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 31 0.71
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 27 8.8
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 200 RYCVYCKSYGHTRDQC-RTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCSK 33
++C C GH C R K + +KCY CG G + NCSK
Sbjct: 89 QHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 135 VKCYRCGETGHVAINCSKTS 154
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 135 VKCYRCGETGHVAINCSKTS 154
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 130 VKCYRCGETGHVAINCSKTS 149
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 129 VKCYRCGETGHVAINCSKTS 148
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 136 VKCYRCGETGHVAINCSKTS 155
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 136 VKCYRCGETGHVAINCSKTS 155
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 135 VKCYRCGETGHVAINCSKTS 154
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 128 VKCYRCGETGHVAINCSKTS 147
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 128 VKCYRCGETGHVAINCSKTS 147
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 12 VKCYRCGETGHVAINCSKTS 31
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 135 VKCYRCGETGHVAINCSKTS 154
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 86 IKCYGCGASGVIRSNCSKCS 27
+KCY CG +G + NCSK S
Sbjct: 125 VKCYRCGETGHVAINCSKTS 144
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 305 RIAACTYGRCRSFPAPTSSGDNADATP 225
R+ C YG C S PA TSS +TP
Sbjct: 1080 RVFCCNYGHCPSTPA-TSSTATPSSTP 1105
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 305 RIAACTYGRCRSFPAPTSSGDNADATP 225
R+ C YG C S PA TSS +TP
Sbjct: 1609 RVFCCNYGHCPSTPA-TSSTATPSSTP 1634
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 305 RIAACTYGRCRSFPAPTSSGDNADATP 225
R+ C YG C S PA TSS +TP
Sbjct: 2307 RVFCCNYGHCPSTPA-TSSTATPSSTP 2332
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,333,409
Number of Sequences: 237096
Number of extensions: 479682
Number of successful extensions: 1333
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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