BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1317 (316 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 31 0.54 U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 31 0.71 M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 31 0.71 DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 31 0.71 DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 31 0.71 DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 31 0.71 BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 31 0.71 BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 31 0.71 BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 31 0.71 BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 31 0.71 AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 31 0.71 AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 31 0.71 AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 31 0.71 Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 27 8.8 >BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain containing 13 protein. Length = 166 Score = 31.5 bits (68), Expect = 0.54 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Frame = -3 Query: 200 RYCVYCKSYGHTRDQC-RTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCSK 33 ++C C GH C R K + +KCY CG G + NCSK Sbjct: 89 QHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145 >U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein protein. Length = 177 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 135 VKCYRCGETGHVAINCSKTS 154 >M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. Length = 177 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 135 VKCYRCGETGHVAINCSKTS 154 >DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid binding protein beta variant 2 protein. Length = 172 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 130 VKCYRCGETGHVAINCSKTS 149 >DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid binding protein beta variant 1 protein. Length = 171 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 129 VKCYRCGETGHVAINCSKTS 148 >DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid binding protein alpha variant 1 protein. Length = 178 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 136 VKCYRCGETGHVAINCSKTS 155 >BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) protein. Length = 178 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 136 VKCYRCGETGHVAINCSKTS 155 >BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, nucleic acid binding protein protein. Length = 177 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 135 VKCYRCGETGHVAINCSKTS 154 >BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. Length = 170 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 128 VKCYRCGETGHVAINCSKTS 147 >BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. Length = 170 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 128 VKCYRCGETGHVAINCSKTS 147 >AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid binding protein protein. Length = 54 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 12 VKCYRCGETGHVAINCSKTS 31 >AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 protein. Length = 177 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 135 VKCYRCGETGHVAINCSKTS 154 >AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens cDNA FLJ30030 fis, clone 3NB692001339, highly similar to CELLULAR NUCLEIC ACID BINDING PROTEIN. ). Length = 167 Score = 31.1 bits (67), Expect = 0.71 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -3 Query: 86 IKCYGCGASGVIRSNCSKCS 27 +KCY CG +G + NCSK S Sbjct: 125 VKCYRCGETGHVAINCSKTS 144 >Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. Length = 3570 Score = 27.5 bits (58), Expect = 8.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 305 RIAACTYGRCRSFPAPTSSGDNADATP 225 R+ C YG C S PA TSS +TP Sbjct: 1080 RVFCCNYGHCPSTPA-TSSTATPSSTP 1105 Score = 27.5 bits (58), Expect = 8.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 305 RIAACTYGRCRSFPAPTSSGDNADATP 225 R+ C YG C S PA TSS +TP Sbjct: 1609 RVFCCNYGHCPSTPA-TSSTATPSSTP 1634 Score = 27.5 bits (58), Expect = 8.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 305 RIAACTYGRCRSFPAPTSSGDNADATP 225 R+ C YG C S PA TSS +TP Sbjct: 2307 RVFCCNYGHCPSTPA-TSSTATPSSTP 2332 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 33,333,409 Number of Sequences: 237096 Number of extensions: 479682 Number of successful extensions: 1333 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1331 length of database: 76,859,062 effective HSP length: 79 effective length of database: 58,128,478 effective search space used: 1453211950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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