Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1317
         (316 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118596-1|AAM49965.1|  165|Drosophila melanogaster LD48005p pro...    28   2.9  
AY075371-1|AAL68216.1|  165|Drosophila melanogaster GM14667p pro...    28   2.9  
AE013599-3513|AAN16117.1|  165|Drosophila melanogaster CG3800-PA...    28   2.9  
AY071600-1|AAL49222.1|  419|Drosophila melanogaster RE65123p pro...    27   5.0  
AY061464-1|AAL29012.1|  254|Drosophila melanogaster LD41905p pro...    27   5.0  
AE014296-3290|AAF49058.3|  419|Drosophila melanogaster CG7290-PA...    27   5.0  
AE013599-1877|AAF58255.1|  182|Drosophila melanogaster CG10102-P...    27   5.0  
AE013599-1876|AAF58256.1|  254|Drosophila melanogaster CG12505-P...    27   5.0  
M17214-1|AAA28507.1|  122|Drosophila melanogaster protein ( D.me...    27   6.7  
BT022951-1|AAY55367.1|  316|Drosophila melanogaster IP11180p pro...    27   6.7  
AE014297-90|AAN13316.1|  316|Drosophila melanogaster CG31525-PA ...    27   6.7  
AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p pro...    26   8.8  
AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule ...    26   8.8  
AE014134-2837|AAN10987.1| 1652|Drosophila melanogaster CG5020-PC...    26   8.8  
AE014134-2834|AAO41206.2| 1677|Drosophila melanogaster CG5020-PD...    26   8.8  
AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB...    26   8.8  
AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA...    26   8.8  

>AY118596-1|AAM49965.1|  165|Drosophila melanogaster LD48005p
           protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 80  CYGCGASGVIRSNCSK 33
           CYGCG SG +R  C +
Sbjct: 145 CYGCGKSGHLRRECDE 160


>AY075371-1|AAL68216.1|  165|Drosophila melanogaster GM14667p
           protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 80  CYGCGASGVIRSNCSK 33
           CYGCG SG +R  C +
Sbjct: 145 CYGCGKSGHLRRECDE 160


>AE013599-3513|AAN16117.1|  165|Drosophila melanogaster CG3800-PA
           protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 80  CYGCGASGVIRSNCSK 33
           CYGCG SG +R  C +
Sbjct: 145 CYGCGKSGHLRRECDE 160


>AY071600-1|AAL49222.1|  419|Drosophila melanogaster RE65123p
           protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 77  YGCGASGVIRSNCSKCSSNFS 15
           Y CGASG +R NC     NF+
Sbjct: 110 YYCGASGAVRGNC-PAGENFN 129


>AY061464-1|AAL29012.1|  254|Drosophila melanogaster LD41905p
           protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCR 150
           C YC   GHT D CR
Sbjct: 227 CTYCSFRGHTFDNCR 241


>AE014296-3290|AAF49058.3|  419|Drosophila melanogaster CG7290-PA
           protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 77  YGCGASGVIRSNCSKCSSNFS 15
           Y CGASG +R NC     NF+
Sbjct: 110 YYCGASGAVRGNC-PAGENFN 129


>AE013599-1877|AAF58255.1|  182|Drosophila melanogaster CG10102-PA
           protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCR 150
           C YC   GHT D CR
Sbjct: 155 CTYCSFRGHTFDNCR 169


>AE013599-1876|AAF58256.1|  254|Drosophila melanogaster CG12505-PA
           protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCR 150
           C YC   GHT D CR
Sbjct: 227 CTYCSFRGHTFDNCR 241


>M17214-1|AAA28507.1|  122|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 122

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQC 153
           C  C+ YGHTR  C
Sbjct: 40  CTNCQEYGHTRSYC 53


>BT022951-1|AAY55367.1|  316|Drosophila melanogaster IP11180p
           protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 260 PTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQCRTLLLKQT 129
           P ++   A+ TP++  P   ++C   KS+ H+    R LL  ++
Sbjct: 141 PRNTNKGANKTPNSSVPLMSKFCEQIKSHFHSVLPTRNLLCSKS 184


>AE014297-90|AAN13316.1|  316|Drosophila melanogaster CG31525-PA
           protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 260 PTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQCRTLLLKQT 129
           P ++   A+ TP++  P   ++C   KS+ H+    R LL  ++
Sbjct: 141 PRNTNKGANKTPNSSVPLMSKFCEQIKSHFHSVLPTRNLLCSKS 184


>AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p protein.
          Length = 1689

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 275  RSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQC 153
            + +  P+S  +N +       P   +YC  C+ +GH   +C
Sbjct: 1645 QDYSTPSSESNNNEKERKLPAPR--KYCDSCEVFGHDTSEC 1683


>AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule
            binding protein D-CLIP-190 protein.
          Length = 1690

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 275  RSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQC 153
            + +  P+S  +N +       P   +YC  C+ +GH   +C
Sbjct: 1646 QDYSTPSSESNNNEKERKLPAPR--KYCDSCEVFGHDTSEC 1684


>AE014134-2837|AAN10987.1| 1652|Drosophila melanogaster CG5020-PC,
            isoform C protein.
          Length = 1652

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 275  RSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQC 153
            + +  P+S  +N +       P   +YC  C+ +GH   +C
Sbjct: 1608 QDYSTPSSESNNNEKERKLPAPR--KYCDSCEVFGHDTSEC 1646


>AE014134-2834|AAO41206.2| 1677|Drosophila melanogaster CG5020-PD,
            isoform D protein.
          Length = 1677

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 275  RSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQC 153
            + +  P+S  +N +       P   +YC  C+ +GH   +C
Sbjct: 1633 QDYSTPSSESNNNEKERKLPAPR--KYCDSCEVFGHDTSEC 1671


>AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB,
            isoform B protein.
          Length = 1689

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 275  RSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQC 153
            + +  P+S  +N +       P   +YC  C+ +GH   +C
Sbjct: 1645 QDYSTPSSESNNNEKERKLPAPR--KYCDSCEVFGHDTSEC 1683


>AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA,
            isoform A protein.
          Length = 1690

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 275  RSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQC 153
            + +  P+S  +N +       P   +YC  C+ +GH   +C
Sbjct: 1646 QDYSTPSSESNNNEKERKLPAPR--KYCDSCEVFGHDTSEC 1684


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,874
Number of Sequences: 53049
Number of extensions: 148898
Number of successful extensions: 468
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 631882260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)