Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1317
(316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 27 2.1
Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z81536-10|CAB04361.1| 340|Caenorhabditis elegans Hypothetical p... 27 3.8
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 26 5.0
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 26 6.6
AF021905-1|AAB84394.1| 358|Caenorhabditis elegans presenilin pr... 26 6.6
AF000265-8|AAB52948.1| 358|Caenorhabditis elegans Homolog of pr... 26 6.6
Z99271-3|CAB16473.1| 172|Caenorhabditis elegans Hypothetical pr... 25 8.7
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 25 8.7
AC024696-13|AAK84505.1| 346|Caenorhabditis elegans Hypothetical... 25 8.7
AC006697-3|AAF60392.1| 346|Caenorhabditis elegans Hypothetical ... 25 8.7
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 83 KCYGCGASGVIRSNCSKCSS 24
KCY CG SG I C++ S
Sbjct: 108 KCYNCGRSGHISRECTESGS 127
>Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical
protein ZK262.9 protein.
Length = 231
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 224 SAEKPX*XRYCVYCKSYGHTRDQCRT 147
SA+ P R+C++CK+ H +C +
Sbjct: 38 SAKVPTMGRFCIFCKTTTHESIECNS 63
>Z81536-10|CAB04361.1| 340|Caenorhabditis elegans Hypothetical
protein F40D4.13 protein.
Length = 340
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/55 (21%), Positives = 20/55 (36%)
Frame = -3
Query: 194 CVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCSKC 30
CV C H ++C K++ +K +G ++ NCS C
Sbjct: 270 CVLCVKDAHETEECTHYPTKESRIARMEAMNLCQKCVKYHGGSCHSKVQLNCSIC 324
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 194 CVYCKSYGHTRDQCR 150
C YC GHT ++CR
Sbjct: 411 CYYCGKRGHTANECR 425
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 316 PPRPASQRVPTAAVEVSPRQRRQ 248
PP+PA Q+ PT A P+ Q
Sbjct: 310 PPKPAVQQAPTRAAPAPPKPAPQ 332
>AF021905-1|AAB84394.1| 358|Caenorhabditis elegans presenilin
protein.
Length = 358
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 33 FGTIRTYDSARAATVTFNIIYFTNYVIVTXIRGLF 137
+G +YD+A + T+T +Y ++I+T G+F
Sbjct: 46 YGLFHSYDTADSGTIT---LYLIGFLILTTSLGVF 77
>AF000265-8|AAB52948.1| 358|Caenorhabditis elegans Homolog of
presenilin protein 1 protein.
Length = 358
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 33 FGTIRTYDSARAATVTFNIIYFTNYVIVTXIRGLF 137
+G +YD+A + T+T +Y ++I+T G+F
Sbjct: 46 YGLFHSYDTADSGTIT---LYLIGFLILTTSLGVF 77
>Z99271-3|CAB16473.1| 172|Caenorhabditis elegans Hypothetical
protein Y43F4A.3 protein.
Length = 172
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = -3
Query: 254 SSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQCRT 147
SS N P YC++C+ H CRT
Sbjct: 3 SSQSNTGLHPLPTTAQLPLYCIFCRRTSHRSIDCRT 38
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 314 APARIAACTYGRCRSFPAPTSSGDNADAT 228
APA AA T F APTS+ +A AT
Sbjct: 266 APATTAATTTATSGLFGAPTSAPSSAPAT 294
>AC024696-13|AAK84505.1| 346|Caenorhabditis elegans Hypothetical
protein F07B7.1 protein.
Length = 346
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 242 NADATPSAEKPX*XRYCVYCKSYGHTRDQCRT 147
N D P+ K YC++C+ H CRT
Sbjct: 190 NKDKKPA--KAYSGSYCIFCRRASHKSIDCRT 219
>AC006697-3|AAF60392.1| 346|Caenorhabditis elegans Hypothetical
protein W09B7.1 protein.
Length = 346
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 242 NADATPSAEKPX*XRYCVYCKSYGHTRDQCRT 147
N D P+ K YC++C+ H CRT
Sbjct: 190 NKDKKPA--KAYSGSYCIFCRRASHKSIDCRT 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,320,753
Number of Sequences: 27780
Number of extensions: 73021
Number of successful extensions: 289
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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