Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1317
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   2.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 14/58 (24%), Positives = 18/58 (31%)
 Frame = -3

Query: 194 CVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCSKCSSN 21
           CV+C++ G      R  LLK                  C  CG        C K + N
Sbjct: 40  CVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVKYCPKGTKN 97


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 316 PPRPASQRVPTAAVEVSPRQRRQAIT 239
           PP+P ++  PT+   VS    + AIT
Sbjct: 250 PPKPQTKTKPTSPYHVS--DHKAAIT 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,276
Number of Sequences: 438
Number of extensions: 853
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)