Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1317
(316 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 31 0.21
At3g43320.1 68416.m04579 hypothetical protein 28 1.1
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 28 1.5
At3g03480.1 68416.m00346 transferase family protein similar to h... 27 3.5
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 27 3.5
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 26 4.6
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 26 4.6
At1g80030.3 68414.m09368 DNAJ heat shock protein, putative simil... 26 4.6
At1g80030.2 68414.m09367 DNAJ heat shock protein, putative simil... 26 4.6
At1g80030.1 68414.m09366 DNAJ heat shock protein, putative simil... 26 4.6
At1g66910.1 68414.m07604 protein kinase, putative similar to rec... 26 6.1
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 25 8.1
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 25 8.1
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 25 8.1
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 25 8.1
At2g15550.1 68415.m01781 hypothetical protein similar to zinc fi... 25 8.1
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/90 (26%), Positives = 32/90 (35%)
Frame = -3
Query: 308 ARIAACTYGRCRSFPAPTSSGDNADATPSAEKPX*XRYCVYCKSYGHTRDQCRTLLLKQT 129
A IA+ T R+ TS S + C +C GH R +C LL ++
Sbjct: 590 AEIASDTRTDSRTDTETTSGTRKVQKLQSEPRRVFRPVCHHCGVVGHIRPRCFRLLREKN 649
Query: 128 AXXXXXXXXXXXXNIKCYGCGASGVIRSNC 39
KCY G G I+ NC
Sbjct: 650 RLMNAYDVRFHGP--KCYHYGVQGHIKRNC 677
>At3g43320.1 68416.m04579 hypothetical protein
Length = 510
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 236 DATPSAEKPX*XRYCVYCKSYGHTRDQCRTLLLKQ 132
DA P +C CK +GH RD C LL KQ
Sbjct: 288 DAVIHYSYPWLSPHCQVCKKWGHLRDSC--LLEKQ 320
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/53 (24%), Positives = 18/53 (33%)
Frame = -3
Query: 194 CVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCS 36
C CK GH C + + +C+ C G + SNCS
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCS 109
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Frame = -3
Query: 251 SGDNA-DATPSAEKPX*XRYCVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCY 75
SG A D + S + R C C GH C + + C
Sbjct: 120 SGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCN 179
Query: 74 GCGASGVIRSNCSKCSSNFS 15
C SG + +C K SN+S
Sbjct: 180 ICSISGHVARHCPKGDSNYS 199
>At3g03480.1 68416.m00346 transferase family protein similar to
hypersensitivity-related gene GB:CAA64636 [Nicotiana
tabacum]; contains Pfam transferase family domain
PF00248
Length = 454
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 7 STALKFELHLEQLERMTPLAPQP 75
+T L F++H +Q E +TP P P
Sbjct: 12 TTGLSFKVHRQQRELVTPAKPTP 34
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 83 KCYGCGASGVIRSNC-SKCSSNFSAVD 6
KC+ CG +G S+C K SN +A D
Sbjct: 264 KCFVCGQTGHFASDCPGKSGSNNAAAD 290
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 83 KCYGCGASGVIRSNCSKCSS 24
KCY CG G I NC S
Sbjct: 122 KCYRCGERGHIERNCKNSPS 141
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 83 KCYGCGASGVIRSNCSKCSS 24
KCY CG G I NC S
Sbjct: 81 KCYRCGERGHIERNCKNSPS 100
>At1g80030.3 68414.m09368 DNAJ heat shock protein, putative similar
to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 500
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Frame = -3
Query: 80 CYGCGASG-VIRSNCSKCS 27
C CG G VI NC KCS
Sbjct: 265 CPNCGGDGEVISENCRKCS 283
>At1g80030.2 68414.m09367 DNAJ heat shock protein, putative similar
to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 500
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Frame = -3
Query: 80 CYGCGASG-VIRSNCSKCS 27
C CG G VI NC KCS
Sbjct: 265 CPNCGGDGEVISENCRKCS 283
>At1g80030.1 68414.m09366 DNAJ heat shock protein, putative similar
to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 500
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Frame = -3
Query: 80 CYGCGASG-VIRSNCSKCS 27
C CG G VI NC KCS
Sbjct: 265 CPNCGGDGEVISENCRKCS 283
>At1g66910.1 68414.m07604 protein kinase, putative similar to
receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 666
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 316 PPRPASQRVPTAAVEVS 266
PPRP Q++PTA ++ S
Sbjct: 631 PPRPVLQQIPTATLQES 647
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = -3
Query: 197 YCVYCKSYGHTRDQCRTLLLKQTAXXXXXXXXXXXXNIKCYGCGASGVIRSNCSKCSS 24
YC C GH R C L +C GCG G R C K S
Sbjct: 265 YCKNCGQEGHRRHYCPEL------------GTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 83 KCYGCGASGVIRSNC 39
KCY CG G I NC
Sbjct: 81 KCYRCGERGHIERNC 95
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 83 KCYGCGASGVIRSNC 39
KCY CG G I NC
Sbjct: 92 KCYRCGERGHIERNC 106
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 83 KCYGCGASGVIRSNC 39
KCY CG G I NC
Sbjct: 122 KCYRCGERGHIERNC 136
>At2g15550.1 68415.m01781 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 589
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 200 RYCVYCKSYGHTRDQCRTLLLKQTA 126
R+C YC+ H +QC L +Q A
Sbjct: 207 RWCSYCRRICHELEQCPLLDAEQKA 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,892,822
Number of Sequences: 28952
Number of extensions: 63809
Number of successful extensions: 228
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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