Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1316
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8HXJ6 Cluster: Putative uncharacterized protein; n=1; ...    40   0.058
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.31 
UniRef50_Q22KP6 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A4A0T9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q9VTR5 Cluster: CG11570-PA; n=2; Sophophora|Rep: CG1157...    33   6.6  
UniRef50_Q5LKU8 Cluster: Transcriptional regulator, LysR family;...    33   8.8  

>UniRef50_Q8HXJ6 Cluster: Putative uncharacterized protein; n=1;
           Macaca fascicularis|Rep: Putative uncharacterized
           protein - Macaca fascicularis (Crab eating macaque)
           (Cynomolgus monkey)
          Length = 133

 Score = 39.9 bits (89), Expect = 0.058
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 425 CGGGEIGFISLP--VAWILFLYHFNLKLCCQLIEVGSCNCTF 306
           C  G++  IS+P    W+L   H+   LCC L+++G CNC +
Sbjct: 3   CPSGDLSLISVPWHQCWMLSTRHYFNLLCCCLLKLGVCNCLY 44


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 545 RWLDELTAHQVLSGYW 592
           RW+DELTAH VLSGYW
Sbjct: 158 RWVDELTAHLVLSGYW 173


>UniRef50_Q22KP6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 686

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -2

Query: 404 FISLPVAWILFLYHFNLKLCCQLIEVGSCNCTFY--YKTDLIVK 279
           F+S+P +++L  Y F LKL C++I++ +C  + Y  YK + + K
Sbjct: 467 FLSVPFSYLLVKYLFQLKLKCKVIDIKNCPESKYQQYKKNTLTK 510


>UniRef50_A4A0T9 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 163

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 692 FLAGEAVMRFGLKGGGSRCNYMGGTFML*MSIASSNHLTPGGL*ARPTI 546
           F +  A++  G   GG RC  +GGT  +  S+  S  L+ G L + PT+
Sbjct: 82  FYSALALIGLGASNGGVRCQRVGGTAFVFGSVIYSGGLSIGALLSEPTL 130


>UniRef50_Q9VTR5 Cluster: CG11570-PA; n=2; Sophophora|Rep:
           CG11570-PA - Drosophila melanogaster (Fruit fly)
          Length = 214

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 156 YFVFKKKTTYLTEFELNLFSYRKKYICIYI*LVNLNYYIRSLNYEVGFI 302
           Y+V +K   Y  +  LNLF  +  Y C Y    N N YI S N++V  I
Sbjct: 11  YYVCQKGRAYEQQCPLNLFWSQMTYRCDYKEYSNCNTYIPSPNHDVEVI 59


>UniRef50_Q5LKU8 Cluster: Transcriptional regulator, LysR family;
           n=4; Rhodobacteraceae|Rep: Transcriptional regulator,
           LysR family - Silicibacter pomeroyi
          Length = 294

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 371 LYHFNLKLCCQLIEVGSCNCTFYYK 297
           +Y  NL+ CCQL+  G+C+   YY+
Sbjct: 124 VYSDNLRTCCQLLSDGTCDFLLYYR 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,425,742
Number of Sequences: 1657284
Number of extensions: 12978714
Number of successful extensions: 25328
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25318
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)