Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1316
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)                     30   1.5  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
          Length = 964

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = -2

Query: 536 KKQKKLRLKNPCDIHDSLNCSFYHHCLR*NIRTSVLWCGGGEIGFISLPVAWILFLYHFN 357
           K+++KL LK  C    SL  +         ++T    CG  E+ F   P   ++ +Y  +
Sbjct: 173 KQRRKLSLKGKCQYPKSLQYTKVSSLKPKQLQT----CGKLELPFEFKPKNGLVGIYGDS 228

Query: 356 LKLCCQLIEVGSCNCTFYYKTDLIVKGS 273
           + L C    +      +Y  T L++ G+
Sbjct: 229 ISLTCMTTWIPGLKINWYKNTGLLIPGT 256


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 539 IKKQKKLRLKNPCDIHDSLNCSFYHHC 459
           ++ + +LRL+    +H  L+C +YHHC
Sbjct: 318 LRLRLRLRLRLRLRLHRHLHCHYYHHC 344


>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 691

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 347 CCQLIEVGSCNCTFYYKTDL 288
           CC L+E+    CTF Y++D+
Sbjct: 331 CCNLVELRLPECTFVYESDI 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,623
Number of Sequences: 59808
Number of extensions: 393031
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)