Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1316
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical p...    31   0.78 
Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    31   1.0  
U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF039040-4|AAB94182.1|  368|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical
           protein F14F8.10 protein.
          Length = 377

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 183 YLTEFELNLFSYRKKYICIYI*LVNLNYYIRSLNYEVGFI 302
           Y  EF     +YR  ++ IY+ LVNL  YI  LNY +  +
Sbjct: 15  YAYEFNDIQENYRGFWVTIYMTLVNLTQYIGVLNYIIAIV 54


>Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical
           protein W02A2.5 protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +3

Query: 132 YKSRGRP---AYFVFKKKTTYLTEFELNLFSYRKKYICIYI*LVNLNYYIRSLNYEVGFI 302
           Y S G P   ++FVF K  + + EF   +    + +I         N Y     +++GFI
Sbjct: 329 YVSDGMPQVSSFFVFTKNFSGIAEFNTQIIM-NQAFI-----QRTFNKYFNE-GFKLGFI 381

Query: 303 VKCTIT*PYLDQLTAKLQIEMI 368
            KC +T P     T  L IE +
Sbjct: 382 PKCEVTEPTASDATKPLDIESV 403


>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +3

Query: 201 LNLFSYRKKYICIYI*LVNLNYYIR 275
           LNLFS++++YIC+ I  +++ Y+ R
Sbjct: 224 LNLFSFKQRYICLVIESISVIYFSR 248


>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 459 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 337
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 158 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 199


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 459 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 337
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 228


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 459 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 337
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 459 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 337
           P +KH   S++VWG +        RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 372 KKNPRDGQRNKTNLSTPTPQY*SSNVSSQAMMIKRTIQTVMDITRVFKSQFFLFFYCLDG 551
           +K PR G++ +   ST  PQ  S ++SSQ      T  +     +  +    +  + LD 
Sbjct: 214 QKKPRGGKKKEAEASTSVPQASSPDISSQEQPESSTSSSKKPSKKEKEPSDPMSTFVLDN 273

Query: 552 W 554
           W
Sbjct: 274 W 274


>AF039040-4|AAB94182.1|  368|Caenorhabditis elegans Hypothetical
           protein T22B11.2 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 135 KSRGRPAYFVFKKKTTYLTEFELNLFSYRKKYICIYI*LVNLNYYIRSLNYEVG 296
           KS   P  F F+K    L    L    YR   I ++I L    Y++  + Y+ G
Sbjct: 5   KSEQLPEEFCFQKNIRNLRSMRLCADEYRLSLIIVFIILFFGAYFLYQVQYKTG 58


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 605 STT*MCHPYSYNGCPRPSNRNA 670
           STT  C  YS+NGC   SN  A
Sbjct: 540 STTRTCQTYSFNGCDGNSNNFA 561


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 539  IKKQKKLRLKNPCDIHDSLNCSFYHHCLR*NIRTSVLWCGGGEIG--FISLPVAWILFLY 366
            +KK + LR    CD+H S   S    CL+    T +  C    I   F SL   +  F+ 
Sbjct: 1441 LKKFRTLRAIYACDMHVSQGISEIFKCLQITDHTGIATCFTHSIENMFASLGSPFPEFVQ 1500

Query: 365  HFNLK 351
            H  L+
Sbjct: 1501 HLTLR 1505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,673
Number of Sequences: 27780
Number of extensions: 318677
Number of successful extensions: 682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)