Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1315
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740...    29   2.2  
04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260     27   5.0  
04_04_1198 - 31679584-31679642,31679740-31679854,31680701-316807...    27   8.7  

>04_04_0051 -
           22371490-22371658,22372333-22372778,22373880-22374054,
           22374134-22374240,22374358-22374646,22374942-22375075,
           22375228-22375423,22375611-22375719,22375839-22375965
          Length = 583

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 278 LSXCLAFFLFRLISXTAGAILTGLSLIGNLG 370
           LS C AFFL  + +   G +   L ++GN+G
Sbjct: 30  LSFCAAFFLGGIKAAVVGPVAAALMVLGNVG 60


>04_04_1201 - 31697707-31697765,31697863-31698013,31698100-31699260
          Length = 456

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 369 PKLPISESPVKIAPAVXEISRNKKKARQ 286
           P+LP + +PV++ P    +   K KAR+
Sbjct: 241 PELPPATAPVQVKPRAANVKMRKPKARE 268


>04_04_1198 -
           31679584-31679642,31679740-31679854,31680701-31680790,
           31682207-31683010
          Length = 355

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 369 PKLPISESPVKIAPAVXEISRNKKKARQ 286
           P+LP +++P ++ P    +   K KAR+
Sbjct: 122 PELPPAKAPAQVKPRAGNVKMRKTKARE 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,388,378
Number of Sequences: 37544
Number of extensions: 90356
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)