Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1315
         (436 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060826-1|AAL28374.1|  542|Drosophila melanogaster GM01209p pro...    29   2.7  
AE014296-2888|AAN11705.1|  538|Drosophila melanogaster CG6479-PB...    29   2.7  
AE014296-2887|AAF49357.1|  542|Drosophila melanogaster CG6479-PA...    29   2.7  

>AY060826-1|AAL28374.1|  542|Drosophila melanogaster GM01209p
           protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 143 NYIRSKE*KNCXYDKKNIDF*VCRYLYCM 57
           N+I  KE  NC YD+ N+ + + ++L  M
Sbjct: 488 NFISDKELHNCVYDRNNLFYVIIQFLIYM 516


>AE014296-2888|AAN11705.1|  538|Drosophila melanogaster CG6479-PB,
           isoform B protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 143 NYIRSKE*KNCXYDKKNIDF*VCRYLYCM 57
           N+I  KE  NC YD+ N+ + + ++L  M
Sbjct: 484 NFISDKELHNCVYDRNNLFYVIIQFLIYM 512


>AE014296-2887|AAF49357.1|  542|Drosophila melanogaster CG6479-PA,
           isoform A protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 143 NYIRSKE*KNCXYDKKNIDF*VCRYLYCM 57
           N+I  KE  NC YD+ N+ + + ++L  M
Sbjct: 488 NFISDKELHNCVYDRNNLFYVIIQFLIYM 516


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,075
Number of Sequences: 53049
Number of extensions: 163824
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)