Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1314
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                95   3e-20
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              88   3e-18
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           80   1e-15
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 73   9e-14
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.11 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.20 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.81 
SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)        29   1.9  
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              28   3.3  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              28   3.3  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     28   4.3  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_32412| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)          27   10.0 
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVD GKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 38/67 (56%), Positives = 50/67 (74%)
 Frame = +3

Query: 258 IDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNGQ 437
           +D+ L +F+T    +T++DAPGH+DFI NMITG + AD A+L+  A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 438 TREHALL 458
           TREHA+L
Sbjct: 61  TREHAIL 67


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 33/69 (47%), Positives = 48/69 (69%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           T+++    F+T   + T++DAPGH+ F+ NMI+G + AD  VL+ +A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 435 QTREHALLA 461
           QTREHA+LA
Sbjct: 269 QTREHAMLA 277



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 30/42 (71%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG 252
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 73.3 bits (172), Expect = 9e-14
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTS 362
           TIDI LWKFET K YVT+IDAPGHRDFIKNMITGTS
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTS 59



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERERGI 255
           MGKGSFKYAWVLDKLKAERERGI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGI 23


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 24/63 (38%), Positives = 29/63 (46%)
 Frame = +1

Query: 67   NIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 247  RGI 255
            RGI
Sbjct: 1987 RGI 1989


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTG 404
           +T ID PGH  F      G +  D  VL+ AA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)
          Length = 616

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 338 DEISVSRSINDGNIXLASFELPENNIDCIPRSRSAFSLSNTQ-AYLKDPLPISWASFSNF 162
           D  S S S N  ++ + +     NNID + R   + S SN   A  + P P       NF
Sbjct: 334 DNFSNSPSSNRNSLYIRN-TTNSNNIDNLTRQMGSSSESNNLVAQNRSPFPHPVKKAPNF 392

Query: 161 SMVRLSIPPH 132
           S++   +P H
Sbjct: 393 SVIEKIVPGH 402


>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           +TIIDA   ++ +   +  TSH  C   +  A  G+++A    +G
Sbjct: 666 ITIIDANYPQNILDCFVVCTSHLLCITAVPGASPGDYDAASVGDG 710


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNGQTR 443
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 276 KFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLI 386
           +F+     + IID PGH  F      G+S  D A+L+
Sbjct: 672 EFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILV 708


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = -3

Query: 398 TGSXDEH--SAISVRGSCDHVLDEISVSRSINDGNIXLASFEL-PENNIDC---IPRSRS 237
           TG   EH  S+ S      H  + +  SR   D +    S +  PEN+      +PR  S
Sbjct: 699 TGYLSEHYSSSFSTHFEGTHYSNHVPASRPQKDRSRSFTSGDTDPENSTKVAPRLPRKHS 758

Query: 236 AFSLSNTQAYLKDPLP 189
             S S   A+L  PLP
Sbjct: 759 EHSSSRFGAHLAPPLP 774


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTG 404
           + I+D PGH+DF ++     +  D  +++     G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 58  THINIVVIGHVDXGKSTTTGHLIY 129
           T I + V+G+V+ GKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_32412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 339 KNMITGTSHADCAVLIXAAGTGEFEAGIS 425
           + ++    HA  A L+  AGTG   AG++
Sbjct: 186 EQVLADAFHAQAAALVQGAGTGAIRAGLA 214


>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
          Length = 663

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           +++ K  +EM   + K  W  +KLKAE E
Sbjct: 42  KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 269  NNIDCIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 132
            + ++C+  S SA  +  T+ +L D +  +    SN++++R   P H
Sbjct: 931  DELECVVLSNSARVVCVTETWLCDSITDTAMVMSNYNLLRKDRPSH 976


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,430
Number of Sequences: 59808
Number of extensions: 255954
Number of successful extensions: 583
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)