SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1314
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...   150   5e-37
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   150   5e-37
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   150   5e-37
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   150   5e-37
U51994-8|AAO21382.1|   77|Caenorhabditis elegans Elongation fact...   136   5e-33
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    91   5e-19
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    91   5e-19
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    82   2e-16
D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    57   7e-09
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    57   7e-09
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    57   7e-09
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    54   7e-08
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    54   7e-08
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    35   0.033
Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...    33   0.13 
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...    33   0.13 
Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical p...    32   0.17 
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    32   0.17 
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical pr...    30   0.70 
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    30   0.70 
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    30   0.70 
Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    29   1.2  
AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    28   3.7  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    28   3.7  
Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    27   8.6  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        27   8.6  

>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score =  150 bits (363), Expect = 5e-37
 Identities = 69/71 (97%), Positives = 69/71 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVD GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERERGI 255
           DKLKAERERGI
Sbjct: 61  DKLKAERERGI 71



 Score =  134 bits (324), Expect = 3e-32
 Identities = 61/69 (88%), Positives = 64/69 (92%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TIDI LWKFET+K Y+TIIDAPGHRDFIKNMITGTS ADCAVL+ A GTGEFEAGISKNG
Sbjct: 72  TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131

Query: 435 QTREHALLA 461
           QTREHALLA
Sbjct: 132 QTREHALLA 140


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  150 bits (363), Expect = 5e-37
 Identities = 69/71 (97%), Positives = 69/71 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVD GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERERGI 255
           DKLKAERERGI
Sbjct: 61  DKLKAERERGI 71



 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/46 (84%), Positives = 42/46 (91%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXA 392
           TIDI LWKFET+K Y+TIIDAPGHRDFIKNMITGTS ADCAVL+ A
Sbjct: 72  TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  150 bits (363), Expect = 5e-37
 Identities = 69/71 (97%), Positives = 69/71 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVD GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERERGI 255
           DKLKAERERGI
Sbjct: 61  DKLKAERERGI 71



 Score =  134 bits (324), Expect = 3e-32
 Identities = 61/69 (88%), Positives = 64/69 (92%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TIDI LWKFET+K Y+TIIDAPGHRDFIKNMITGTS ADCAVL+ A GTGEFEAGISKNG
Sbjct: 72  TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131

Query: 435 QTREHALLA 461
           QTREHALLA
Sbjct: 132 QTREHALLA 140


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  150 bits (363), Expect = 5e-37
 Identities = 69/71 (97%), Positives = 69/71 (97%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVD GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAERERGI 255
           DKLKAERERGI
Sbjct: 61  DKLKAERERGI 71



 Score =  134 bits (324), Expect = 3e-32
 Identities = 61/69 (88%), Positives = 64/69 (92%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TIDI LWKFET+K Y+TIIDAPGHRDFIKNMITGTS ADCAVL+ A GTGEFEAGISKNG
Sbjct: 72  TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131

Query: 435 QTREHALLA 461
           QTREHALLA
Sbjct: 132 QTREHALLA 140


>U51994-8|AAO21382.1|   77|Caenorhabditis elegans Elongation factor
           protein 4, isoformb protein.
          Length = 77

 Score =  136 bits (330), Expect = 5e-33
 Identities = 62/67 (92%), Positives = 63/67 (94%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
           MGKEK HINIVVIGHVD GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 223 DKLKAER 243
           DKLK  +
Sbjct: 61  DKLKVTK 67


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 90.6 bits (215), Expect = 5e-19
 Identities = 41/68 (60%), Positives = 49/68 (72%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           T+DI    FETS   + ++DAPGH+DFI NMITGTS AD A+L+  A TGEFE G    G
Sbjct: 235 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 294

Query: 435 QTREHALL 458
           QT+EHALL
Sbjct: 295 QTKEHALL 302



 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 38/68 (55%), Positives = 50/68 (73%)
 Frame = +1

Query: 52  EKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
           +K  IN++V+GHVD GKST  GHL++    +D RTI+KF+ EA   GK SF YAWVLD+ 
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226

Query: 232 KAERERGI 255
           + ERERG+
Sbjct: 227 EEERERGV 234


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 90.6 bits (215), Expect = 5e-19
 Identities = 41/68 (60%), Positives = 49/68 (72%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           T+DI    FETS   + ++DAPGH+DFI NMITGTS AD A+L+  A TGEFE G    G
Sbjct: 253 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 312

Query: 435 QTREHALL 458
           QT+EHALL
Sbjct: 313 QTKEHALL 320



 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 38/68 (55%), Positives = 50/68 (73%)
 Frame = +1

Query: 52  EKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
           +K  IN++V+GHVD GKST  GHL++    +D RTI+KF+ EA   GK SF YAWVLD+ 
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244

Query: 232 KAERERGI 255
           + ERERG+
Sbjct: 245 EEERERGV 252


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           T+++    FET K + TI+DAPGH+ F+ NMI G + AD AVL+ +A  GEFE G  + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233

Query: 435 QTREHALL 458
           QTREH++L
Sbjct: 234 QTREHSML 241



 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +1

Query: 46  GKEKTHINIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 225
           G  K HIN+V +GHVD GKST  G L++  G +DKRT+EK+E+EA+E G+ S+  +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163

Query: 226 KLKAERERG 252
               ERE+G
Sbjct: 164 TNDEEREKG 172


>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 31/69 (44%), Positives = 41/69 (59%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TI+    ++ET+K +   ID PGH D+IKNMITG +  + A+L+ AA  G          
Sbjct: 99  TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 151

Query: 435 QTREHALLA 461
           QTREH LLA
Sbjct: 152 QTREHLLLA 160



 Score = 36.3 bits (80), Expect = 0.011
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 49  KEKTHINIVVIGHVDXGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
           ++K H+N+  IGHVD GK+T T     ++    G   R  E  +   +E  +G    A+ 
Sbjct: 45  RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104

Query: 220 LDKLKAER 243
           L+   A+R
Sbjct: 105 LEYETAKR 112


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 31/69 (44%), Positives = 41/69 (59%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TI+    ++ET+K +   ID PGH D+IKNMITG +  + A+L+ AA  G          
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152

Query: 435 QTREHALLA 461
           QTREH LLA
Sbjct: 153 QTREHLLLA 161



 Score = 36.3 bits (80), Expect = 0.011
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 49  KEKTHINIVVIGHVDXGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
           ++K H+N+  IGHVD GK+T T     ++    G   R  E  +   +E  +G    A+ 
Sbjct: 46  RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105

Query: 220 LDKLKAER 243
           L+   A+R
Sbjct: 106 LEYETAKR 113


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 31/69 (44%), Positives = 41/69 (59%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TI+    ++ET+K +   ID PGH D+IKNMITG +  + A+L+ AA  G          
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152

Query: 435 QTREHALLA 461
           QTREH LLA
Sbjct: 153 QTREHLLLA 161



 Score = 36.3 bits (80), Expect = 0.011
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 49  KEKTHINIVVIGHVDXGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
           ++K H+N+  IGHVD GK+T T     ++    G   R  E  +   +E  +G    A+ 
Sbjct: 46  RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105

Query: 220 LDKLKAER 243
           L+   A+R
Sbjct: 106 LEYETAKR 113


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 31/69 (44%), Positives = 39/69 (56%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TI++    +E+     +  D PGH DFIKNMI GTS  D AVL+ AA  G  E       
Sbjct: 95  TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147

Query: 435 QTREHALLA 461
           QT+EH +LA
Sbjct: 148 QTKEHLILA 156



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 55  KTHINIVVIGHVDXGKSTTT 114
           K ++N+  IGH+D GK+T T
Sbjct: 43  KINVNVGTIGHIDHGKTTLT 62


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 31/69 (44%), Positives = 39/69 (56%)
 Frame = +3

Query: 255 TIDIVLWKFETSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNG 434
           TI++    +E+     +  D PGH DFIKNMI GTS  D AVL+ AA  G  E       
Sbjct: 95  TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147

Query: 435 QTREHALLA 461
           QT+EH +LA
Sbjct: 148 QTKEHLILA 156



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 55  KTHINIVVIGHVDXGKSTTT 114
           K ++N+  IGH+D GK+T T
Sbjct: 43  KINVNVGTIGHIDHGKTTLT 62


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 27/63 (42%), Positives = 31/63 (49%)
 Frame = +1

Query: 67  NIVVIGHVDXGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           NI VI HVD GK+T T  L+Y  G I           A  + KG+     V D L  ERE
Sbjct: 27  NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73

Query: 247 RGI 255
           RGI
Sbjct: 74  RGI 76


>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCG 138
           M +++   N+ VI HVD GKST T  L+ K G
Sbjct: 13  MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDXGKSTTTGHLIYKCG 138
           M +++   N+ VI HVD GKST T  L+ K G
Sbjct: 13  MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44


>Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical
           protein F46B6.6a protein.
          Length = 702

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTG 404
           VT +D PGH  F      G   AD  VL+ AA  G
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 67  NIVVIGHVDXGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 183
           N  ++ HVD GKST    L+  CG +    K+ ++K + E +
Sbjct: 44  NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTG 404
           + +ID PGH DF   +    +  D  +L+ AA  G
Sbjct: 104 LNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  NIVVIGHVDXGKSTTTGHLIYKCGGID 147
           NI +  H+D GK+T T  ++Y  G ID
Sbjct: 46  NIGISAHIDSGKTTVTERILYYAGRID 72


>Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical
           protein C47B2.7b protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTGEFEAGISKNGQTREHALLA 461
           + +ID PGH   I+ ++  ++  D A++I      +  AGI    QT EH LLA
Sbjct: 74  LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLA 120



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 64  INIVVIGHVDXGKSTTT 114
           +N+ ++GHVD GK+T T
Sbjct: 14  LNLGILGHVDSGKTTLT 30


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 19  FVIRD*PKMGKEKTHINIVVIGHVDXGKSTTTGHLIY 129
           ++IRD P   K+     + V+G+VD GKST  G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 19  FVIRD*PKMGKEKTHINIVVIGHVDXGKSTTTGHLIY 129
           ++IRD P   K+     + V+G+VD GKST  G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162


>Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           +KR ++  EKE  +     F Y   LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305


>Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
           +KR ++  EKE  +     F Y   LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240


>AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.8 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 285 TSKXYVTIIDAPGHRDFIKNMITGTSHADCAVLIXA 392
           T   +V+ +D PGH   +  M+ G +  D A L+ A
Sbjct: 124 TCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 300 VTIIDAPGHRDFI--KNMITGTSHADCAVLIXAA 395
           V IID+ G RDFI  KN+  GT  AD  +++ AA
Sbjct: 73  VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 332 ISVSRSIND-GNIXLASFELPENNIDCIPR 246
           +S  ++I+D GNI   +F  P    DCIPR
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIPR 226


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSHADCAVLI 386
           IID PGH  F      G+S  D A+L+
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILV 579


>Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical
           protein C47B2.7a protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 64  INIVVIGHVDXGKSTTT 114
           +N+ ++GHVD GK+T T
Sbjct: 14  LNLGILGHVDSGKTTLT 30


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 288 SKXYV-TIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTG 404
           SK Y+  IID PGH +F   M      AD  V++  A  G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 288 SKXYV-TIIDAPGHRDFIKNMITGTSHADCAVLIXAAGTG 404
           SK Y+  IID PGH +F   M      AD  V++  A  G
Sbjct: 73  SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,000
Number of Sequences: 27780
Number of extensions: 189912
Number of successful extensions: 489
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -