Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1312
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    90   1e-19
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   0.58 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   4.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.1  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   5.4  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   7.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 43/66 (65%), Positives = 52/66 (78%)
 Frame = +2

Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTLT 436
           VP P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT
Sbjct: 64  VPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLT 121

Query: 437 SVYDAI 454
           +V++AI
Sbjct: 122 AVHNAI 127


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHV 343
           H+P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 102 HLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 212 FCNVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVIN 63
           FC+V +P++      GF    RL D+ + GI  ++  +    TH + +IN
Sbjct: 416 FCDVGVPEIS-----GFAHISRLSDKKVAGISPNSGPYKVDSTHEARIIN 460


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 354  ETVRSCLSPXTKPVLLTNKRGHAQ 425
            E+ +  ++  TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 154 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSCADA*TEGLSEDPD 297
           S S PTP +KP+       K K +  +   RS+S  +    G+S   D
Sbjct: 627 SQSPPTPRTKPSHKPPVSYKNKLVTQSAIGRSTSVREGRYAGISSQMD 674


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 65   LLHWNDEYEDHQSERC*GGFLRDLDLAGA 151
            + +WND Y + ++ER    FL+DL++  A
Sbjct: 998  ICNWNDSYGEFETER--RYFLQDLEIEDA 1024


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 63  YCNYVSRPLLNRFNTIFSN 7
           Y N++ +P+L  F+TI SN
Sbjct: 326 YTNWIQKPILGIFDTIRSN 344


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 78  TMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 233
           T++ K++ AS  E   F   + Q  + +  +   KA+   L     KE+ LH
Sbjct: 125 TLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,399
Number of Sequences: 5004
Number of extensions: 31432
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)