BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1312 (454 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 71 3e-13 05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 67 5e-12 02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 61 5e-10 04_04_1644 + 35015849-35016838 29 1.7 03_02_0488 - 8824980-8825267,8825364-8827775 28 3.1 12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993... 27 5.3 12_02_0211 + 15694061-15694457,15694497-15695452 27 7.1 11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.3 05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 27 9.3 >03_02_0683 + 10363963-10364037,10364112-10364185,10364312-10364435, 10365047-10365229,10365478-10365600 Length = 192 Score = 71.3 bits (167), Expect = 3e-13 Identities = 38/67 (56%), Positives = 47/67 (70%) Frame = +2 Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433 HVP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTL Sbjct: 64 HVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTL 119 Query: 434 TSVYDAI 454 T+V+D I Sbjct: 120 TAVHDGI 126 >05_03_0610 - 16167557-16167679,16168236-16168418,16169291-16169414, 16169514-16169626,16169668-16169742 Length = 205 Score = 67.3 bits (157), Expect = 5e-12 Identities = 36/67 (53%), Positives = 46/67 (68%) Frame = +2 Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433 +VP KA++KI +RLVRELEKKFSGK VV V R+I+ P + V RPR+RTL Sbjct: 77 YVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTL 132 Query: 434 TSVYDAI 454 T+V+D I Sbjct: 133 TAVHDGI 139 >02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 Length = 129 Score = 60.9 bits (141), Expect = 5e-10 Identities = 34/67 (50%), Positives = 45/67 (67%) Frame = +2 Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433 HV KAF+KI +RLV+ELEKKFSGK VVF R+I+ +P +K + PR+RTL Sbjct: 49 HVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTL 104 Query: 434 TSVYDAI 454 +V+D I Sbjct: 105 ITVHDGI 111 >04_04_1644 + 35015849-35016838 Length = 329 Score = 29.1 bits (62), Expect = 1.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 194 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR 78 P L FE+ + +FDQR+ E ++L DL HR Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171 >03_02_0488 - 8824980-8825267,8825364-8827775 Length = 899 Score = 28.3 bits (60), Expect = 3.1 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +3 Query: 99 KASGAEADSFETSISQALVELETNSDL 179 ++SG + FET +S A++E+E N+ L Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331 >12_02_0554 + 20351660-20352299,20398588-20398907,20399120-20399344, 20399375-20399818 Length = 542 Score = 27.5 bits (58), Expect = 5.3 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +1 Query: 154 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSCADA*TEGLSEDPDQACP 309 +N +P PT++ G LQ N T+ + C++ LSE D CP Sbjct: 311 NNKRPLPTTE---GRSWLQMNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCP 359 >12_02_0211 + 15694061-15694457,15694497-15695452 Length = 450 Score = 27.1 bits (57), Expect = 7.1 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = -1 Query: 364 LTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHMMMIDF 239 +T+ ++ F + L+ L + DLD++ G+ + RH +IDF Sbjct: 304 ITIEIEEITFPSTLM--LLESKDLDVILGMDWLIRHRGIIDF 343 >11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979, 7782225-7782324,7782720-7782801,7782928-7782940, 7783621-7783681 Length = 1433 Score = 26.6 bits (56), Expect = 9.3 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = -1 Query: 421 AWPLLFVSNTGFVXGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 269 AW L +S++ + L +S KD+M +L FE D+P + F Sbjct: 1167 AWKSLAISSSAML-----SLMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212 >05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793, 7535889-7535932,7536042-7536146,7536223-7536344, 7536807-7536894,7536966-7537052,7537718-7537786, 7537859-7538188,7539777-7539824,7540003-7540069, 7540150-7540208,7541220-7541453,7541536-7541601, 7541684-7541883,7542104-7542197,7542295-7542414, 7542596-7542703,7542808-7542871,7543378-7543409, 7546049-7548007 Length = 1407 Score = 26.6 bits (56), Expect = 9.3 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 208 QKLKKLNYTIRSRSSSCADA*TEGLSEDPD-QACP*ARKEVQW*TCSLCW 354 +KL K Y SR+ +C D+ TE +E PD P EV W +C+ Sbjct: 898 EKLCK-TYVKHSRTKACVDSTTESNNETPDCSTVPPEEFEV-WKLVDICF 945 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,783,776 Number of Sequences: 37544 Number of extensions: 199089 Number of successful extensions: 522 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 883560296 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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