Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1312
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 71 3e-13
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 67 5e-12
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 61 5e-10
04_04_1644 + 35015849-35016838 29 1.7
03_02_0488 - 8824980-8825267,8825364-8827775 28 3.1
12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993... 27 5.3
12_02_0211 + 15694061-15694457,15694497-15695452 27 7.1
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.3
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 27 9.3
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 71.3 bits (167), Expect = 3e-13
Identities = 38/67 (56%), Positives = 47/67 (70%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
HVP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTL
Sbjct: 64 HVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTL 119
Query: 434 TSVYDAI 454
T+V+D I
Sbjct: 120 TAVHDGI 126
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 67.3 bits (157), Expect = 5e-12
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
+VP KA++KI +RLVRELEKKFSGK VV V R+I+ P + V RPR+RTL
Sbjct: 77 YVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTL 132
Query: 434 TSVYDAI 454
T+V+D I
Sbjct: 133 TAVHDGI 139
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 60.9 bits (141), Expect = 5e-10
Identities = 34/67 (50%), Positives = 45/67 (67%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
HV KAF+KI +RLV+ELEKKFSGK VVF R+I+ +P +K + PR+RTL
Sbjct: 49 HVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTL 104
Query: 434 TSVYDAI 454
+V+D I
Sbjct: 105 ITVHDGI 111
>04_04_1644 + 35015849-35016838
Length = 329
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 194 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR 78
P L FE+ + +FDQR+ E ++L DL HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 99 KASGAEADSFETSISQALVELETNSDL 179
++SG + FET +S A++E+E N+ L
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331
>12_02_0554 +
20351660-20352299,20398588-20398907,20399120-20399344,
20399375-20399818
Length = 542
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 154 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSCADA*TEGLSEDPDQACP 309
+N +P PT++ G LQ N T+ + C++ LSE D CP
Sbjct: 311 NNKRPLPTTE---GRSWLQMNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCP 359
>12_02_0211 + 15694061-15694457,15694497-15695452
Length = 450
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 364 LTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHMMMIDF 239
+T+ ++ F + L+ L + DLD++ G+ + RH +IDF
Sbjct: 304 ITIEIEEITFPSTLM--LLESKDLDVILGMDWLIRHRGIIDF 343
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 421 AWPLLFVSNTGFVXGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 269
AW L +S++ + L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAML-----SLMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 208 QKLKKLNYTIRSRSSSCADA*TEGLSEDPD-QACP*ARKEVQW*TCSLCW 354
+KL K Y SR+ +C D+ TE +E PD P EV W +C+
Sbjct: 898 EKLCK-TYVKHSRTKACVDSTTESNNETPDCSTVPPEEFEV-WKLVDICF 945
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,776
Number of Sequences: 37544
Number of extensions: 199089
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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