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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1312
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...    71   3e-13
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...    67   5e-12
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     61   5e-10
04_04_1644 + 35015849-35016838                                         29   1.7  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   3.1  
12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993...    27   5.3  
12_02_0211 + 15694061-15694457,15694497-15695452                       27   7.1  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   9.3  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    27   9.3  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 38/67 (56%), Positives = 47/67 (70%)
 Frame = +2

Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
           HVP    KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTL
Sbjct: 64  HVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTL 119

Query: 434 TSVYDAI 454
           T+V+D I
Sbjct: 120 TAVHDGI 126


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 36/67 (53%), Positives = 46/67 (68%)
 Frame = +2

Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
           +VP    KA++KI +RLVRELEKKFSGK VV V  R+I+  P   + V     RPR+RTL
Sbjct: 77  YVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTL 132

Query: 434 TSVYDAI 454
           T+V+D I
Sbjct: 133 TAVHDGI 139


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 34/67 (50%), Positives = 45/67 (67%)
 Frame = +2

Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
           HV     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +P +K    +    PR+RTL
Sbjct: 49  HVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTL 104

Query: 434 TSVYDAI 454
            +V+D I
Sbjct: 105 ITVHDGI 111


>04_04_1644 + 35015849-35016838
          Length = 329

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 194 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR 78
           P L FE+ +  +FDQR+     E ++L      DL  HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 99  KASGAEADSFETSISQALVELETNSDL 179
           ++SG   + FET +S A++E+E N+ L
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331


>12_02_0554 +
           20351660-20352299,20398588-20398907,20399120-20399344,
           20399375-20399818
          Length = 542

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 154 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSCADA*TEGLSEDPDQACP 309
           +N +P PT++   G   LQ     N T+   +  C++     LSE  D  CP
Sbjct: 311 NNKRPLPTTE---GRSWLQMNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCP 359


>12_02_0211 + 15694061-15694457,15694497-15695452
          Length = 450

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 364 LTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHMMMIDF 239
           +T+  ++  F + L+  L +  DLD++ G+ +  RH  +IDF
Sbjct: 304 ITIEIEEITFPSTLM--LLESKDLDVILGMDWLIRHRGIIDF 343


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 421  AWPLLFVSNTGFVXGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 269
            AW  L +S++  +      L +S KD+M   +L FE  D+P +       F
Sbjct: 1167 AWKSLAISSSAML-----SLMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 208  QKLKKLNYTIRSRSSSCADA*TEGLSEDPD-QACP*ARKEVQW*TCSLCW 354
            +KL K  Y   SR+ +C D+ TE  +E PD    P    EV W    +C+
Sbjct: 898  EKLCK-TYVKHSRTKACVDSTTESNNETPDCSTVPPEEFEV-WKLVDICF 945


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,776
Number of Sequences: 37544
Number of extensions: 199089
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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