BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1312 (454 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 84 5e-17 SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 31 0.59 SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 3.1 SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 5.5 SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 9.6 >SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) Length = 157 Score = 84.2 bits (199), Expect = 5e-17 Identities = 40/56 (71%), Positives = 47/56 (83%) Frame = +2 Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRS 424 VP+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P K+R KQKRPRS Sbjct: 66 VPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120 Score = 76.6 bits (180), Expect = 9e-15 Identities = 37/59 (62%), Positives = 46/59 (77%) Frame = +3 Query: 78 TMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 254 T S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III Sbjct: 6 TASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIII 64 >SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) Length = 417 Score = 30.7 bits (66), Expect = 0.59 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 9/45 (20%) Frame = +1 Query: 151 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRSSSC 258 WS+ KPTP KPN FG T Q L+K N+ + RS C Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRSHEC 169 >SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) Length = 1831 Score = 28.3 bits (60), Expect = 3.1 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +1 Query: 172 PTSKPNFGSFTLQKLKKLNYTIRS 243 P S N+G FT+++LK +YT +S Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438 >SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) Length = 151 Score = 27.5 bits (58), Expect = 5.5 Identities = 11/26 (42%), Positives = 21/26 (80%) Frame = +2 Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSG 334 VP+P++ A QK++ +L R++E+K +G Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93 >SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) Length = 612 Score = 26.6 bits (56), Expect = 9.6 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = +2 Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSG 334 VP+P+++A QK++ L R +E+K +G Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,603,216 Number of Sequences: 59808 Number of extensions: 223712 Number of successful extensions: 547 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 527 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 547 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 908427626 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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