Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1312
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               84   5e-17
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           31   0.59 
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   3.1  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   5.5  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     27   9.6  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 40/56 (71%), Positives = 47/56 (83%)
 Frame = +2

Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRS 424
           VP+P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P  K+R   KQKRPRS
Sbjct: 66  VPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 76.6 bits (180), Expect = 9e-15
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = +3

Query: 78  TMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 254
           T S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III
Sbjct: 6   TASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIII 64


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = +1

Query: 151 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRSSSC 258
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS  C
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRSHEC 169


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 172  PTSKPNFGSFTLQKLKKLNYTIRS 243
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +2

Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSG 334
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 257 VPMPKLKAFQKIQIRLVRELEKKFSG 334
           VP+P+++A QK++  L R +E+K +G
Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,216
Number of Sequences: 59808
Number of extensions: 223712
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)