Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1312
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...    82   2e-16
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    30   0.69 
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical p...    27   6.4  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 39/67 (58%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRV-ANKQKRPRSRT 430
           +VP+P+LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRT
Sbjct: 62  YVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRT 121

Query: 431 LTSVYDA 451
           LT+V+DA
Sbjct: 122 LTAVHDA 128



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 28/55 (50%), Positives = 40/55 (72%)
 Frame = +3

Query: 90  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 254
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +III
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIII 61


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 14/65 (21%), Positives = 34/65 (52%)
 Frame = +3

Query: 90  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIMCRCL 269
           +++ A+  + +  +   ++ LVE E          E  +T+A+ ++ + K++++   +CL
Sbjct: 538 EVVTAAVEQEEEDDVIEAEELVEDEEEDVTTTTTTEAPVTRAQRVKKNKKRAVVTKHQCL 597

Query: 270 N*RPF 284
           N R F
Sbjct: 598 NLRSF 602


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 154 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSCADA*TEGLS 285
           S+SK T      F SF  Q ++K  YT  S SSS + A T  L+
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSRAPTTRLT 419


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 176 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 90
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical
           protein T20D4.5 protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 158 FDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAITFL 45
           FD R + R +E + +     DD+  HR+  +   + +L
Sbjct: 348 FDLRNKGRNVEKVVVKMTGMDDITQHRAGTVECCLNYL 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,469,123
Number of Sequences: 27780
Number of extensions: 176618
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)