Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1312
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.22 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.3  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 120 DSFETSISQALVELETNSDLKAQLRE 197
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  DLIVV*KRNCNIYYIGTMSTKIIKASG 110
           D++   K+N N+Y + T+  K +  SG
Sbjct: 448 DVLTDPKKNPNVYKVETVGDKYMAVSG 474


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 135 SISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIMCRCL 269
           +I + + ++    D++  L E  + +  +I+  NKK  +  CRC+
Sbjct: 568 NIKKEIYDILPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  DLIVV*KRNCNIYYIGTMSTKIIKASG 110
           D++   K+N N+Y + T+  K +  SG
Sbjct: 448 DVLTDPKKNPNVYKVETVGDKYMAVSG 474


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 304 KPDLDLLKGLQFRHRHMMMIDF 239
           K D+DL +GL F  R  ++  F
Sbjct: 454 KSDVDLSRGLDFTPRGAVLARF 475


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 358 VSNKDYMFTTELLFELTD 305
           +SN   M  TELL ELT+
Sbjct: 2   LSNNSSMTQTELLQELTN 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,331
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)