Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1312
(454 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 71 3e-13
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 71 3e-13
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 69 1e-12
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 69 1e-12
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 68 3e-12
At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /... 30 0.84
At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /... 30 0.84
At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /... 28 2.6
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 5.9
At2g26170.2 68415.m03141 thromboxane-A synthase, putative / cyto... 27 5.9
At2g26170.1 68415.m03140 thromboxane-A synthase, putative / cyto... 27 5.9
At5g40640.1 68418.m04933 expressed protein 27 7.8
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 7.8
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 71.3 bits (167), Expect = 3e-13
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
+VP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTL
Sbjct: 64 YVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTL 119
Query: 434 TSVYDAI 454
TSV++A+
Sbjct: 120 TSVHEAM 126
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 71.3 bits (167), Expect = 3e-13
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
+VP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTL
Sbjct: 64 YVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTL 119
Query: 434 TSVYDAI 454
TSV++A+
Sbjct: 120 TSVHEAM 126
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 69.3 bits (162), Expect = 1e-12
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
+VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTL
Sbjct: 64 NVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTL 119
Query: 434 TSVYDAI 454
TSV++AI
Sbjct: 120 TSVHEAI 126
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 69.3 bits (162), Expect = 1e-12
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
+VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTL
Sbjct: 64 NVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTL 119
Query: 434 TSVYDAI 454
TSV++AI
Sbjct: 120 TSVHEAI 126
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 68.1 bits (159), Expect = 3e-12
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +2
Query: 254 HVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTL 433
+VP KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTL
Sbjct: 64 YVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTL 119
Query: 434 TSVYDAI 454
TSV++A+
Sbjct: 120 TSVHEAM 126
>At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 206 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAIT 51
N PKL +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPKLAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 404
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 206 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAIT 51
N PKL +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPKLAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 206 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAIT 51
N P+L +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPELAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 157 NSKPTPTSKPNFGSF 201
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At2g26170.2 68415.m03141 thromboxane-A synthase, putative /
cytochrome P450 family protein simiar to Thromboxane-A
synthase (TXA synthase) (TXS) (SP:P47787) [Sus scrofa];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_15810029_gb_AY054283.1_
Length = 439
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 162 ETNSDLKAQLRELYITKAKEIELHNKKSIIIMCRCLN*RPF 284
+TN+ L QL E+ +AKE E +K + ++ + PF
Sbjct: 184 KTNARLSGQLNEIVSKRAKEAETDSKDFLSLILKARESDPF 224
>At2g26170.1 68415.m03140 thromboxane-A synthase, putative /
cytochrome P450 family protein simiar to Thromboxane-A
synthase (TXA synthase) (TXS) (SP:P47787) [Sus scrofa];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_15810029_gb_AY054283.1_
Length = 522
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 162 ETNSDLKAQLRELYITKAKEIELHNKKSIIIMCRCLN*RPF 284
+TN+ L QL E+ +AKE E +K + ++ + PF
Sbjct: 267 KTNARLSGQLNEIVSKRAKEAETDSKDFLSLILKARESDPF 307
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 281 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPXHKTRVANKQKRPRSRTLTSVYD 448
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 138 ISQALVELETNSDLKA-QLRELYITKAKEIE 227
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,913,173
Number of Sequences: 28952
Number of extensions: 165831
Number of successful extensions: 465
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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