Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1311
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    45   1e-05
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    40   3e-04
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    34   0.021
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.45 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   4.2  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   4.2  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   5.5  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    25   7.3  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   9.7  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   9.7  

>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 38/61 (62%)
 Frame = +3

Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
           FTK+  +  TQ++K   LD+D+LV++N D++F+   +  +P    PD F+  +F  KP +
Sbjct: 166 FTKLSVFEQTQFDKVCILDSDLLVLKNMDDIFDTPYVYESP--AEPDMFSFPIFK-KPDD 222

Query: 480 E 482
           E
Sbjct: 223 E 223



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 70  VTLATN--DSYGLGALVLAHSLRR---AGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 234
           +TL T+  D Y     VL + L+      S YP   L+   V E   +RLR   +E++ V
Sbjct: 81  LTLPTSEHDVYFNATRVLVYKLKHHPETKSKYPVHVLVMKGVDEWKIERLRLDGAEIIMV 140

Query: 235 DVLDSRE 255
           D + + +
Sbjct: 141 DQIKTED 147


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 16/42 (38%), Positives = 29/42 (69%)
 Frame = +3

Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPD 425
           FTK+  + + +Y++  FLD+DIL I+  D++F+  +LS + D
Sbjct: 157 FTKLRVFEMYEYDRICFLDSDILPIKKMDKVFDVHQLSYSKD 198



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 438 DCFNSGVFVFKPSNETXEKLIQFA 509
           D FN+G+FVFKP     ++L+  A
Sbjct: 256 DYFNAGLFVFKPLKAHYKRLMALA 279


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +3

Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 398
           F+K+  +   Q++K   +D+DIL+++N D++F+
Sbjct: 161 FSKLRIFEQIQFDKICVIDSDILIMKNIDDIFD 193


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 151  PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRERL 261
            P V + +P     + D L A +++V+T+DVLD R +L
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGRLKL 1474


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 401 TLEEFIAILDHQYIGI*EYAFLVLSEVPAVYLCEGDAELWPLEEGQVSR--SLESRTSTV 228
           +L     I D+  I +  Y   ++ E+PA+Y     A  W + E Q  R  SL   TS +
Sbjct: 152 SLAALFVIFDNGLITMSRY---IMIEIPALYFMSLTAFYWSVYEAQQKRPFSLRWHTSLL 208

Query: 227 TT 222
           +T
Sbjct: 209 ST 210


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 124 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
           +LR+A +  P V +   TV+E +RD    V + VVT
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 293 AELWPLEEGQVSRSLESRTSTVTTSEKTARRR 198
           ++ +PL++     SLES  S+VT SE+T + R
Sbjct: 375 SKFYPLKQYFYFDSLESLPSSVTISEETCKPR 406


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 487 KVSFEGLKTKTPELKQSGHPTS 422
           K   EGLK+  P+    GHP S
Sbjct: 15  KEILEGLKSSVPDASPKGHPDS 36


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 399 REELSAAPDVGWPDCFNSGVFVFKPSNETXEKLIQ 503
           RE L+  PD GW    ++   +  PS    +++++
Sbjct: 132 RETLAEYPDAGWIWLLDAKAVIMNPSESLKDRVLK 166


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 88  DSYGLGALVLAHSLRRAGSVYPAVALI 168
           +S   G L L H+LR+ G+++P  A +
Sbjct: 312 NSTEFGWLALTHALRKKGAIFPIHAYL 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,026
Number of Sequences: 5004
Number of extensions: 47778
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)