Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1311
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 61 9e-10
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 61 9e-10
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 61 9e-10
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 53 2e-07
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 48 7e-06
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 46 3e-05
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 46 4e-05
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 46 4e-05
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 45 6e-05
07_03_1743 - 29167078-29167290,29167389-29168159 43 2e-04
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 30 1.4
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223 29 4.3
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 29 4.3
06_02_0308 + 14124373-14124706,14124888-14124910 28 7.6
01_05_0513 - 22864657-22867899 28 7.6
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
++K W LT Y+K +F+DAD+L+++N D LF E++A + FNSGV V +PSN
Sbjct: 423 YSKFRLWQLTDYDKIIFIDADLLILRNVDFLFAMPEITATGNNA--TLFNSGVMVIEPSN 480
Query: 480 ETXEKLI 500
T + L+
Sbjct: 481 CTFQLLM 487
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 521 SFDGGDQGLLNSFFFDWAHGDINKHLSFL 607
S++GGDQG LN F W H I KH++FL
Sbjct: 495 SYNGGDQGYLNE-IFTWWH-RIPKHMNFL 521
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 64 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRA 210
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S+ R L A
Sbjct: 348 AYATILHSASEYVCGAISAAQSIRQAGSTRDLVILVDDTISDHHRKGLEA 397
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/68 (44%), Positives = 44/68 (64%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
++K W LT Y++ VF+DADILV+++ D LF +L+A + G FNSGV V +PS
Sbjct: 400 YSKFRLWQLTDYDRVVFVDADILVLRDLDALFGFPQLTAVGNDG--SLFNSGVMVIEPSQ 457
Query: 480 ETXEKLIQ 503
T + LI+
Sbjct: 458 CTFQSLIR 465
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 76 LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSE 186
L ++D+Y GA+VLA S+RRAGS V L TVS+
Sbjct: 330 LHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHDHTVSK 366
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 503 IRQQRG--SFDGGDQGLLNSFFFDW 571
IRQ+R S++GGDQG LN F W
Sbjct: 464 IRQRRTIRSYNGGDQGFLNEVFVWW 488
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
++K W LT Y+K +F+DAD+L+++N D LF E++A + FNSGV V +PSN
Sbjct: 398 YSKFRLWQLTDYDKIIFIDADLLILRNVDFLFAMPEITATGNNA--TLFNSGVMVIEPSN 455
Query: 480 ETXEKLI 500
T + L+
Sbjct: 456 CTFQLLM 462
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 521 SFDGGDQGLLNSFFFDWAHGDINKHLSFL 607
S++GGDQG LN F W H I KH++FL
Sbjct: 470 SYNGGDQGYLNE-IFTWWH-RIPKHMNFL 496
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 64 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRA 210
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S R L A
Sbjct: 323 AYATILHSASEYVCGAITAAQSIRQAGSTRDFVILVDETISNHHRKGLEA 372
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
++K W+LT+Y++ VFLDAD+LV + LF E+SA + G FNSGV V +P
Sbjct: 398 YSKFWLWSLTEYDRVVFLDADLLVQRPMSPLFAMPEVSATANHG--TLFNSGVMVVEPCG 455
Query: 480 ETXEKLI 500
T L+
Sbjct: 456 CTLRLLM 462
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +2
Query: 521 SFDGGDQGLLNSFFFDW----AHGDINKH 595
S++GGDQG LN F W +H + KH
Sbjct: 470 SYNGGDQGYLNEVFSWWHRLPSHANFMKH 498
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +3
Query: 294 ITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKP 473
+T K++ W L YE+ V +D+D + +Q DELF+ + A P F++G+FV +P
Sbjct: 139 LTLNKLYAWTLVDYERVVMIDSDNIFLQKTDELFQCGQFCAV--FINPCYFHTGLFVLQP 196
Query: 474 SNETXEKLI 500
S + + ++
Sbjct: 197 SMDVFKGML 205
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 294 ITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 398
I ++K+ W +YE+ V+LDADI V N DELFE
Sbjct: 100 INYSKLRIWEFVEYERMVYLDADIQVFDNIDELFE 134
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 294 ITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFK 470
+T K++ W+L Y++ V LD+D + +QN DELF+ + A P F++G+FV +
Sbjct: 77 LTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAV--FINPCIFHTGLFVLQ 133
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/68 (30%), Positives = 42/68 (61%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
+TK+ +N+T Y K V+LDAD +V+++ ++LF+ + ++ + NSGV V +PS
Sbjct: 109 YTKLKIFNMTSYRKVVYLDADTVVVKSIEDLFKCGKFCG--NLKHSERMNSGVMVVEPSE 166
Query: 480 ETXEKLIQ 503
+ +++
Sbjct: 167 TVFKDMMR 174
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/72 (29%), Positives = 42/72 (58%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
+TK+ +N+T Y+K +LDAD +V+++ +++F + A ++ + NSGV V +PS
Sbjct: 113 YTKLKIFNMTSYKKVAYLDADTIVVKSIEDIFNCGKFCA--NLKHSERMNSGVMVVEPSE 170
Query: 480 ETXEKLIQFASS 515
++ +S
Sbjct: 171 TLFNDMMDKVNS 182
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 58 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRA 210
+ A+VTL D + LG VL S+R + V L++ VSE R L A
Sbjct: 37 DEAYVTLLYGDEFVLGVRVLGKSIRDTDTSRDLVVLVSDGVSEYSRKLLEA 87
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 521 SFDGGDQGLLNSFFFDWAHGDI 586
S+ GGDQG LNS++ D+A+ +
Sbjct: 185 SYTGGDQGFLNSYYADFANSRV 206
>07_03_1743 - 29167078-29167290,29167389-29168159
Length = 327
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 294 ITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREE 407
I ++K+ W +YE+ V+LDADI V N D LF+ ++
Sbjct: 95 INYSKLRIWEFVEYERMVYLDADIQVFDNIDHLFDLDK 132
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 61 RAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRL 204
RA+VT LA + Y G + LA LRR S YP V + P V R +L
Sbjct: 18 RAYVTFLAGDGDYWKGVVGLAKGLRRVRSAYPLVVAVLPDVPGEHRRKL 66
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 16 LELSHETTPGFIMSNR-AWVTLATNDSYGLGALVLAHSLRRAGSV-YPAVALITPTV-SE 186
+ L+H TTP + NR + +A+N LGA H LR A +V P ++L T SE
Sbjct: 299 VHLTHLTTPESVFHNRLGFAAVASNP---LGAAASGHLLRAASAVASPLLSLFASTFRSE 355
Query: 187 AMR-DRL 204
A R D+L
Sbjct: 356 ANRLDKL 362
>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
Length = 254
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 263 VSRSLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWASTRAPKP 96
V S + T+ T + ARR+ L + + S + T PA+RS ST P P
Sbjct: 176 VGCSPHAATAAATATATAARRKRLRHAHAMASTSDSDNSTSPAKRSFTPSTPPPPP 231
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 299 GDAELWPLEEGQVSRSLESRTSTVTTSE 216
G +LW LEE +V RSL S+ T+ E
Sbjct: 178 GSIKLWDLEEAKVVRSLTGHRSSCTSVE 205
>06_02_0308 + 14124373-14124706,14124888-14124910
Length = 118
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 106 ALVLAHSLRRAGSVYPAVALITPTVSEA-MRDRLRAVF 216
+LVL L+ G + VA + P +SEA +R R +A+F
Sbjct: 25 SLVLLQQLQLLGVLVVVVAGVAPGISEAQVRSRFKAIF 62
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 145 PSRRGGANGPAPELPSRRSRLWPELP 68
P GG N P PE+P R P++P
Sbjct: 172 PEGGGGDNAPPPEVPPEAPRDLPDIP 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,623
Number of Sequences: 37544
Number of extensions: 340066
Number of successful extensions: 1113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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