Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1311
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)         148   5e-36
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)        62   3e-10
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)                     62   4e-10
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)        60   2e-09
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        51   1e-06
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)         48   7e-06
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)                        32   0.36 
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)                 31   1.1  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           29   2.5  
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003)                  29   3.4  
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)                   29   4.4  
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)              28   7.7  

>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
          Length = 114

 Score =  148 bits (358), Expect = 5e-36
 Identities = 62/84 (73%), Positives = 75/84 (89%)
 Frame = +3

Query: 258 AHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWP 437
           A+LALL RPELGITFTKI CWNLT Y+KCVF+DAD+LV+QNCDELF+R ELSA PD+GWP
Sbjct: 23  ANLALLSRPELGITFTKIRCWNLTHYQKCVFMDADMLVLQNCDELFDRCELSAVPDIGWP 82

Query: 438 DCFNSGVFVFKPSNETXEKLIQFA 509
           DCFNSG+FVF+PS  T + L+++A
Sbjct: 83  DCFNSGMFVFEPSRATHKALLKYA 106


>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
          Length = 847

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
 Frame = +3

Query: 297 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPD---VGWPD-CFNSGVFV 464
           T T+ H WN TQY K ++ D D +++ N DELF   E  AA +    G  D CFN+G+ V
Sbjct: 240 THTRFHAWNYTQYSKIIYADPDYMLLSNMDELFHLSEDFAAAECARAGMVDPCFNAGLLV 299

Query: 465 FKPSNETXEKLIQ 503
           F+PS +  + +++
Sbjct: 300 FRPSYKDYKAIME 312



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 67  WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD 246
           W++   ND Y + A+VL HS++    V   + L++  VS+A    L      V  V  +D
Sbjct: 161 WLSALVNDEYVIPAVVLGHSIKTLSCVKKMLVLVSDEVSKASIHALERTGWSVKLVTAMD 220

Query: 247 SR 252
            R
Sbjct: 221 CR 222


>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1492

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
 Frame = +3

Query: 297  TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE-REELSAA--PDVGWPD-CFNSGVFV 464
            T T+ H WN T Y K ++ D DI+++ N DELF   +E +AA     G  D CFN+G+ V
Sbjct: 1169 THTRFHAWNYTHYRKIIYADPDIMLMSNMDELFAIPDEFAAAYCGRSGMVDPCFNAGLLV 1228

Query: 465  FKPSNETXEKLIQ 503
            FKPS+   E +++
Sbjct: 1229 FKPSHHDYEMIMK 1241



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +1

Query: 67   WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV 240
            W+++  ND Y + A+VL H++R    V      ++  VS++ +  L    +  V+ +V
Sbjct: 1069 WLSVLVNDEYVIPAVVLGHTIRVFSCVKTMTVFVSNEVSKSGQKALEKTMTVFVSNEV 1126


>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
          Length = 310

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
 Frame = +3

Query: 297 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWP----DCFNSGVFV 464
           T T+ H W  TQ+ K V+LD D + + N DELF+ +   AA     P     CFN+G+ V
Sbjct: 171 THTRFHAWGFTQFSKIVYLDPDYMPMTNIDELFDVDSEFAASVCSRPGVLDPCFNAGMLV 230

Query: 465 FKPSNETXEKLI 500
           F+P N + ++++
Sbjct: 231 FRPENRSKKEIM 242



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +1

Query: 64  AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVL 243
           AW+T   ND + L ALVL +SL++       +A ++  V+   R+ LR V  EV   + L
Sbjct: 91  AWLTALVNDDFALPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEVQQHERL 150

Query: 244 D 246
           D
Sbjct: 151 D 151


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 55  SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
           S  AWVTL    D Y  GAL +A SLR   + Y  V ++TP V+   R  L  ++  V+ 
Sbjct: 257 SRCAWVTLVMLGDGYAAGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIE 316

Query: 232 VDVLDSRERLTW 267
           V  +  R R  W
Sbjct: 317 VPYIQHRCRKLW 328



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +3

Query: 297 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 398
           +FTK +C NL QYE+ +F+DAD++V  N D+LFE
Sbjct: 343 SFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 376


>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
          Length = 347

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 55  SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
           S  AWVTL    D Y  GAL +AHSLRR  + +  V ++TP V+ +    L  V+  V+ 
Sbjct: 45  SRYAWVTLVMCGDGYAAGALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVIE 104

Query: 232 VDVL 243
           V  +
Sbjct: 105 VQYI 108



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = +3

Query: 297 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 398
           +FTK +C  L  YE+ +F+DAD++V +N D+LFE
Sbjct: 131 SFTKWNCLKL-DYERVLFIDADMIVKENSDDLFE 163


>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +1

Query: 88  DSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRERL 261
           D Y  GAL +AHSLR   + +  V ++TP V+   R  LR V+ +V+ V  +  + RL
Sbjct: 4   DGYAAGALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQKCRL 61



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +3

Query: 297 TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 398
           +FTK +C NL QYE+ +F+DAD++V  N D+LFE
Sbjct: 78  SFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 111


>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
          Length = 186

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +3

Query: 378 NCDELFEREELSAAPDVGWPD----CFNSGVFVFKPSNETXEKLI 500
           N DELF+ +   AA     P     CFN+G+ VF+P N + ++++
Sbjct: 5   NIDELFDVDSEFAASVCSRPGVLDPCFNAGMLVFRPENRSKKEIM 49


>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
          Length = 491

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 219 GENCAK--TIPHSFTDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI 58
           G  C K  +I      G+C++ Y  + + G  + +G  Q     GV  G S  CS+
Sbjct: 134 GTRCFKDSSIKDVCIQGKCEKSYLNIQQVGCDDVLGSGQRVDRCGVCNGDSSTCSV 189


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 281 PLEEGQVSRSLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWAST 111
           PL+      +  +R STV TS KT+ R  L  + T    S+++  T  AR +E  +T
Sbjct: 250 PLQNNFFFAAKTTRFSTVKTSTKTSTRAGLTKAATTSPNSSSSLSTGKARTTEATTT 306


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 248  ESRTSTVTTSEKTA-RRRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 96
            + RT+  TT  KT+ +RR  I   T   +S       P+      S WA T  PKP
Sbjct: 1748 KGRTTRTTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1803


>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 248  ESRTSTVTTSEKTA-RRRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 96
            + RT+  TT  KT+ +RR  I   T   +S       P+      S WA T  PKP
Sbjct: 1534 KGRTTRTTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1589


>SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003)
          Length = 252

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 538 ITTIKTASLLANCI-SFSKVSFEGLKTKTPELKQSGH-PTSGAADXXXXXXXXSQFWITN 365
           +T+I   + +A  + SFS    EG + + PELK   H   +G AD         Q W+TN
Sbjct: 190 LTSIPRKNRIAPTLESFSSEHIEGYEMRLPELKPFKHYSLNGTAD-----KQIHQAWVTN 244

Query: 364 ISASRNT 344
              +R++
Sbjct: 245 CIVARDS 251


>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 263 VSRSLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWAST 111
           +S+   + TS +TTS  + RR    ++L +  +S +   T P R  ++A +
Sbjct: 138 ISKGYNTTTSGLTTSRLSGRRSQSFSNLNLSSVSNSHTSTRPYRPEDYADS 188


>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
          Length = 899

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 254 SLESRTSTVTTSEKTARRRSLIASLTVGVMSATAG 150
           S  +    V TS K +RRRS I+       +ATAG
Sbjct: 685 SPSTNAGVVVTSSKPSRRRSSISQAAAAFAAATAG 719


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,353,060
Number of Sequences: 59808
Number of extensions: 373298
Number of successful extensions: 1115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)