Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1311
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p pro...   155   4e-38
AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB...   155   4e-38

>AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p
           protein.
          Length = 333

 Score =  155 bits (377), Expect = 4e-38
 Identities = 67/85 (78%), Positives = 76/85 (89%)
 Frame = +3

Query: 255 AAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGW 434
           AA+LALL RPELG+TFTK+HCW L Q+EKCVFLDAD LV+QNCDELFEREELSAAPDV W
Sbjct: 69  AANLALLSRPELGVTFTKLHCWRLVQFEKCVFLDADTLVLQNCDELFEREELSAAPDVSW 128

Query: 435 PDCFNSGVFVFKPSNETXEKLIQFA 509
           PDCFNSGVFVFKPS +T  ++ +FA
Sbjct: 129 PDCFNSGVFVFKPSVDTFAQITEFA 153



 Score = 87.4 bits (207), Expect = 2e-17
 Identities = 41/68 (60%), Positives = 53/68 (77%)
 Frame = +1

Query: 52  MSNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
           MS  AWVTL TND+Y LGALVLAHSL+RA + +    L+TP VS+AMRDRL+ V++ V  
Sbjct: 1   MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQE 60

Query: 232 VDVLDSRE 255
           V+VLDS++
Sbjct: 61  VNVLDSQD 68



 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 33/48 (68%), Positives = 36/48 (75%)
 Frame = +2

Query: 512 QRGSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
           + GSFDGGDQGLLN FF DW+  DI KHL F+YNVT  A Y YLPA K
Sbjct: 155 KNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPAFK 202


>AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB,
           isoform B protein.
          Length = 333

 Score =  155 bits (377), Expect = 4e-38
 Identities = 67/85 (78%), Positives = 76/85 (89%)
 Frame = +3

Query: 255 AAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGW 434
           AA+LALL RPELG+TFTK+HCW L Q+EKCVFLDAD LV+QNCDELFEREELSAAPDV W
Sbjct: 69  AANLALLSRPELGVTFTKLHCWRLVQFEKCVFLDADTLVLQNCDELFEREELSAAPDVSW 128

Query: 435 PDCFNSGVFVFKPSNETXEKLIQFA 509
           PDCFNSGVFVFKPS +T  ++ +FA
Sbjct: 129 PDCFNSGVFVFKPSVDTFAQITEFA 153



 Score = 87.4 bits (207), Expect = 2e-17
 Identities = 41/68 (60%), Positives = 53/68 (77%)
 Frame = +1

Query: 52  MSNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
           MS  AWVTL TND+Y LGALVLAHSL+RA + +    L+TP VS+AMRDRL+ V++ V  
Sbjct: 1   MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQE 60

Query: 232 VDVLDSRE 255
           V+VLDS++
Sbjct: 61  VNVLDSQD 68



 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 33/48 (68%), Positives = 36/48 (75%)
 Frame = +2

Query: 512 QRGSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
           + GSFDGGDQGLLN FF DW+  DI KHL F+YNVT  A Y YLPA K
Sbjct: 155 KNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPAFK 202


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,293,440
Number of Sequences: 53049
Number of extensions: 567353
Number of successful extensions: 1753
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)