Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1311
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64599-6|AAL11464.1| 284|Caenorhabditis elegans Unidentified vi... 134 7e-32
U64599-5|AAM69110.1| 303|Caenorhabditis elegans Unidentified vi... 134 7e-32
U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified vi... 134 7e-32
Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical pr... 124 7e-29
AL132862-24|CAB60560.1| 173|Caenorhabditis elegans Hypothetical... 83 2e-16
AF038621-1|AAB94141.4| 89|Caenorhabditis elegans Hypothetical ... 55 4e-08
Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 28 6.8
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 28 6.8
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 28 6.8
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z82062-6|CAB04894.1| 312|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81587-14|CAB04711.1| 312|Caenorhabditis elegans Hypothetical p... 27 8.9
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 8.9
>U64599-6|AAL11464.1| 284|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform b
protein.
Length = 284
Score = 134 bits (323), Expect = 7e-32
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +3
Query: 261 HLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPD 440
+L L++RP+LG+TFTK+HCW LTQY KCVFLDAD LV++N DELF R + SAA D+GWPD
Sbjct: 70 NLRLIERPDLGVTFTKLHCWRLTQYTKCVFLDADTLVLRNADELFTRPDFSAASDIGWPD 129
Query: 441 CFNSGVFVFKPSNETXEKLIQFA 509
FNSGVFV+ P+NET +L+ FA
Sbjct: 130 SFNSGVFVYVPNNETYRQLVDFA 152
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +1
Query: 58 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 237
+ AW+TLATND+Y GALVL HSLR AG+ LI+ VS +R +L F +V VD
Sbjct: 2 SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61
Query: 238 VLDSRE 255
V +S +
Sbjct: 62 VFNSND 67
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2
Query: 518 GSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
GS+DGGDQGLLN FF +W L F+YN+T AFY+Y A K
Sbjct: 156 GSYDGGDQGLLNDFFSNWRDLPSEHRLPFIYNMTAGAFYTYAAAYK 201
>U64599-5|AAM69110.1| 303|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform c
protein.
Length = 303
Score = 134 bits (323), Expect = 7e-32
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +3
Query: 261 HLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPD 440
+L L++RP+LG+TFTK+HCW LTQY KCVFLDAD LV++N DELF R + SAA D+GWPD
Sbjct: 70 NLRLIERPDLGVTFTKLHCWRLTQYTKCVFLDADTLVLRNADELFTRPDFSAASDIGWPD 129
Query: 441 CFNSGVFVFKPSNETXEKLIQFA 509
FNSGVFV+ P+NET +L+ FA
Sbjct: 130 SFNSGVFVYVPNNETYRQLVDFA 152
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +1
Query: 58 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 237
+ AW+TLATND+Y GALVL HSLR AG+ LI+ VS +R +L F +V VD
Sbjct: 2 SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61
Query: 238 VLDSRE 255
V +S +
Sbjct: 62 VFNSND 67
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2
Query: 518 GSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
GS+DGGDQGLLN FF +W L F+YN+T AFY+Y A K
Sbjct: 156 GSYDGGDQGLLNDFFSNWRDLPSEHRLPFIYNMTAGAFYTYAAAYK 201
>U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform a
protein.
Length = 429
Score = 134 bits (323), Expect = 7e-32
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +3
Query: 261 HLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPD 440
+L L++RP+LG+TFTK+HCW LTQY KCVFLDAD LV++N DELF R + SAA D+GWPD
Sbjct: 70 NLRLIERPDLGVTFTKLHCWRLTQYTKCVFLDADTLVLRNADELFTRPDFSAASDIGWPD 129
Query: 441 CFNSGVFVFKPSNETXEKLIQFA 509
FNSGVFV+ P+NET +L+ FA
Sbjct: 130 SFNSGVFVYVPNNETYRQLVDFA 152
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +1
Query: 58 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 237
+ AW+TLATND+Y GALVL HSLR AG+ LI+ VS +R +L F +V VD
Sbjct: 2 SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61
Query: 238 VLDSRE 255
V +S +
Sbjct: 62 VFNSND 67
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2
Query: 518 GSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
GS+DGGDQGLLN FF +W L F+YN+T AFY+Y A K
Sbjct: 156 GSYDGGDQGLLNDFFSNWRDLPSEHRLPFIYNMTAGAFYTYAAAYK 201
>Z82052-1|CAB04823.1| 300|Caenorhabditis elegans Hypothetical
protein T25E12.5 protein.
Length = 300
Score = 124 bits (298), Expect = 7e-29
Identities = 53/85 (62%), Positives = 65/85 (76%)
Frame = +3
Query: 261 HLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPD 440
+L+L+ RP+LG+TFTK HCW LTQY K VFLDAD ++I+N DELFER + SAA D+GWPD
Sbjct: 70 NLSLIGRPDLGVTFTKFHCWRLTQYSKAVFLDADTMIIRNSDELFERPDFSAAADIGWPD 129
Query: 441 CFNSGVFVFKPSNETXEKLIQFASS 515
FNSGVFVF PS L+ A+S
Sbjct: 130 MFNSGVFVFTPSLTVYRALLSLATS 154
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +1
Query: 64 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVL 243
AW+TLATND Y GAL L +SL +G+ LIT +S ++R++L F EV VD+
Sbjct: 4 AWITLATNDRYAQGALTLLNSLHASGTTRRIHCLITNEISNSVREKLVNKFDEVTVVDIF 63
Query: 244 DSRE 255
+S +
Sbjct: 64 NSND 67
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +2
Query: 518 GSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
GSFDGGDQGLLN +F +W L F+YN+T FYSY A +
Sbjct: 156 GSFDGGDQGLLNEYFSNWRDLPSAHRLPFIYNMTAGEFYSYPAAYR 201
>AL132862-24|CAB60560.1| 173|Caenorhabditis elegans Hypothetical
protein Y73F8A.31 protein.
Length = 173
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = +3
Query: 345 VFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSNETXEKLIQFASS 515
VFLDAD ++I+NCDELFER + SAA D+GWPD FNSGVFVF PS L+ A+S
Sbjct: 79 VFLDADTMIIRNCDELFERPDFSAAADIGWPDMFNSGVFVFTPSLTVYRALLALATS 135
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 518 GSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVT 619
GSFD GDQGLL +F +W L F+YN+T
Sbjct: 137 GSFDDGDQGLLIEYFSNWNDLSSAHRLPFIYNMT 170
>AF038621-1|AAB94141.4| 89|Caenorhabditis elegans Hypothetical
protein M116.2 protein.
Length = 89
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +2
Query: 518 GSFDGGDQGLLNSFFFDWAHGDINKHLSFLYNVTTAAFYSYLPALK 655
GSFDG DQGLLN++F +W L F+YN+T FYSYL A +
Sbjct: 27 GSFDGRDQGLLNAYFSNWRDLSSAHRLPFIYNMTAGEFYSYLAAYR 72
>Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
+TKI W +T+++ V LD DIL ++ LFE A+ D FNSGVFV K +N
Sbjct: 99 YTKIRLWAMTEFDVIVHLDLDILPTRDISTLFECGSFCAS--FRHSDMFNSGVFVLK-TN 155
Query: 480 ET 485
ET
Sbjct: 156 ET 157
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 416 CSRRGMARLFQLRRFCLQTFKRNLXETDTIRQQRGSFDGGDQGLLNSFFFD 568
C+ + +F F L+T + + + S+DGGDQG LN++F D
Sbjct: 136 CASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAESYDGGDQGFLNTYFSD 186
>Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = +3
Query: 300 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 479
+TKI W +T+++ V LD DIL ++ LFE A+ D FNSGVFV K +N
Sbjct: 99 YTKIRLWAMTEFDVIVHLDLDILPTRDISTLFECGSFCAS--FRHSDMFNSGVFVLK-TN 155
Query: 480 ET 485
ET
Sbjct: 156 ET 157
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 416 CSRRGMARLFQLRRFCLQTFKRNLXETDTIRQQRGSFDGGDQGLLNSFFFD 568
C+ + +F F L+T + + + S+DGGDQG LN++F D
Sbjct: 136 CASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAESYDGGDQGFLNTYFSD 186
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 153 RVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI*HYEAGCSLV 28
RV RAG A R + +Q +V Q++PC + C ++
Sbjct: 615 RVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQGDQQRACEII 656
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 153 RVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI*HYEAGCSLV 28
RV RAG A R + +Q +V Q++PC + C ++
Sbjct: 552 RVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQGDQQRACEII 593
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 245 SRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWASTRAPKP*ESFVARV 72
S S +T KT R S ++ TV SAT + A+R A +PKP S V V
Sbjct: 273 SEASYASTRPKTERSSSHKSASTV-TSSATITTLDSAKRKPLAKNASPKPPRSPVLEV 329
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 245 SRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWASTRAPKP*ESFVARV 72
S S +T KT R S ++ TV SAT + A+R A +PKP S V V
Sbjct: 269 SEASYASTRPKTERSSSHKSASTV-TSSATITTLDSAKRKPLAKNASPKPPRSPVLEV 325
>Z82062-6|CAB04894.1| 312|Caenorhabditis elegans Hypothetical
protein W02A11.1 protein.
Length = 312
Score = 27.5 bits (58), Expect = 8.9
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -2
Query: 302 EGDAELWPLEEGQVSRSLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSE 123
EGD + + GQ+ ++ R T+ R +I +SATAGY R +
Sbjct: 17 EGDTVIVYVTYGQMVPTIVKRGQTLMMKYGALRHEFIIGKRWGQRLSATAGYVYILRPTS 76
Query: 122 WASTRA-PKP*ESFVARVTHARFDIM--KPGVVSCDSSS 15
TRA P+ + ++ KPG V C+S +
Sbjct: 77 DLWTRALPRRTQILYTADCAQILSLLDAKPGSVICESGT 115
>Z81587-14|CAB04711.1| 312|Caenorhabditis elegans Hypothetical
protein W02A11.1 protein.
Length = 312
Score = 27.5 bits (58), Expect = 8.9
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = -2
Query: 302 EGDAELWPLEEGQVSRSLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSE 123
EGD + + GQ+ ++ R T+ R +I +SATAGY R +
Sbjct: 17 EGDTVIVYVTYGQMVPTIVKRGQTLMMKYGALRHEFIIGKRWGQRLSATAGYVYILRPTS 76
Query: 122 WASTRA-PKP*ESFVARVTHARFDIM--KPGVVSCDSSS 15
TRA P+ + ++ KPG V C+S +
Sbjct: 77 DLWTRALPRRTQILYTADCAQILSLLDAKPGSVICESGT 115
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 245 SRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWASTRAPKP 96
S +S +TT +A + S S T S T G T + S AST P
Sbjct: 819 STSSVITTGSTSAPQSSTAVSSTTTSPSTTTGSTPAPQSSTVASTTTVSP 868
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,124
Number of Sequences: 27780
Number of extensions: 275635
Number of successful extensions: 917
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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