Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1308
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.20 
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.5  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   5.8  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   7.6  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +1

Query: 370  EAQRNSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSILQC 519
            +++ NS  ++ VC  +  RLG  C++ S      +K LF+C D+D +L C
Sbjct: 950  DSENNS--LNLVCSDTSSRLGIDCFYISQ-----KKLLFSC-DKDRLLTC 991


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 292 PYFNVHLTLQTDTTLSCSHSQFIFSLYNTNSVIKTFC 182
           P FNV   +  D ++S S S  + SL   NS I +FC
Sbjct: 316 PGFNVPSLISDDPSVSSSLSSSVASLSLQNSNILSFC 352


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +2

Query: 74  FHENIRVNLLKCCYVSCYSFSLQLTQVFQSSSFSYNTK 187
           FH +I + LL+C Y++C S  +++  +  +SS + +++
Sbjct: 681 FHMHINLELLECVYLTC-SMLMEIPAMAAASSTASDSR 717


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 402 RVSAFFYPARTQLLFLQ*Y*SHVAESALRLQGSR*HLTVPARL 530
           ++ A+FYP    L F   Y S  AE+ ++   +  + + PA L
Sbjct: 588 KLMAYFYPLLEHLAFASPYVSSFAEACIQAIATNCNYSTPAEL 630


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 560 LR*FXRFLSSQTSWHCKMLSRSLQAKSAFCHVASV-SLKK 444
           LR F RFL +   W  K++   +   SAF H   + S+KK
Sbjct: 361 LRSFQRFLRTYPEWRKKVVLIQITISSAFKHPKLLSSIKK 400


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 491 QAKSAFCHVASVSLKK*QLCPSRIKEGGHTYDIFV 387
           QA  +FC +   S  +  +CP+R+    + YD FV
Sbjct: 281 QAVESFCTIKFNSCGQVCVCPNRVYVHKNVYDEFV 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,057
Number of Sequences: 5004
Number of extensions: 41388
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)