Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1308
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1137 - 26392399-26392613,26392828-26393233                       29   1.9  
02_02_0233 + 8105765-8107840                                           29   1.9  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    27   7.7  

>12_02_1137 - 26392399-26392613,26392828-26393233
          Length = 206

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 8   RTESRTYRDTLETNNQISNGFLFHENIRVNLLKCCYVSCYSFSLQ 142
           R   R       +N+ +S+G+ F  ++ V L +CC + CY    Q
Sbjct: 32  RRSERVAGSRWSSNSGVSHGWTFVSDLEV-LTRCCMIDCYGGDAQ 75


>02_02_0233 + 8105765-8107840
          Length = 691

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 368 WRRREIAQRCRTCVRLLLSGSDTAAISSVILKPRGRKRSSPARIEIASYSASSFGR 535
           +RR  I    RTC+ L   GSD  AI  +       ++ +P  +  A  +++  GR
Sbjct: 37  FRRYRIPALFRTCIWLAYLGSDALAIYGLATLFNRHRKPAPGAVAAAGGTSNGHGR 92


>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
            14050145-14050272,14050409-14050502,14050749-14051237,
            14052622-14052915,14053602-14053732,14053829-14055440,
            14055539-14055651,14055902-14056933,14057023-14057145,
            14057250-14057688
          Length = 1656

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 365  AWRRREIAQRCRTCVRLLLSGSDTAAISSVILKPRGRK 478
            A++  E  QR + CVR+     DTA+ S V +  +G++
Sbjct: 1357 AYKAEETTQRVQGCVRIAEEMRDTASKSLVTIHQQGQQ 1394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,914,213
Number of Sequences: 37544
Number of extensions: 264193
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)