Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1308
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14919| Best HMM Match : MAM (HMM E-Value=0) 37 0.010
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086) 37 0.013
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 32 0.28
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06) 32 0.28
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.59
SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 29 3.4
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0) 28 4.5
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08) 28 6.0
>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
Length = 1332
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 352 SQCRGVEAQRNSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFAC 492
S + + + + + CPP + R+ +SC FF W+ AL C
Sbjct: 584 SYIQAISMNKTNLSSNSKCPPGWYRIRNSCLFFQQANFNWESALVRC 630
>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
Length = 407
Score = 36.7 bits (81), Expect = 0.013
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP F+R SC+F T TW+ A+ C + + L
Sbjct: 97 CPADFVRNERSCFFHQQTPLTWENAIAQCAQKGASL 132
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP ++ + SCY F T+ TW A C +S L
Sbjct: 121 CPRGYVEIRGSCYKFHMTKDTWINAFHECTRENSTL 156
>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
Length = 583
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 364 GVEAQRNSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
G E +T + Y C + CY +S E TW + C D+D+ L
Sbjct: 80 GDEVVTATTYLRYKCKQGWYYYNGKCYHYSSFEETWTQGQRYCLDQDADL 129
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 28.7 bits (61), Expect(2) = 0.59
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 403 VCPPSFIRLGHSCYFFSDTEA---TWQKALFACK 495
+CP +++ SCY F+ +A TW+KA C+
Sbjct: 257 LCPVNWVPYKDSCYHFNTHQAQLVTWEKAYNVCQ 290
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACK 495
CP + + G SCY + W++A C+
Sbjct: 1732 CPSGYSKYGESCYLMYYNKLNWKEAGEVCQ 1761
Score = 21.0 bits (42), Expect(2) = 0.59
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1
Query: 502 DSILQCQLVWEDKNLXNYLN 561
D + + VW D++ NY N
Sbjct: 328 DRVSEGTFVWSDRSPVNYTN 347
>SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 397 SYVCPPSFIRLGHSCYFFSDTEATWQKALFAC 492
S CP ++RL SCY T W A AC
Sbjct: 2 SLQCPAGWVRLNRSCYKADQTIMNWADARTAC 33
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 403 VCPPSFIRLGHSCYFFSDTEATWQKALFACKDR 501
VC + G CY F+ + WQ A C++R
Sbjct: 1514 VCRTGWKEYGQYCYQFNSDKRNWQSARLMCQNR 1546
>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 397 SYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
S C S+ CYF S E W A +C+ R S L
Sbjct: 56 SSTCDSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTL 94
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -3
Query: 295 LPYFNVHLTLQTDTTLSCSHSQFIFSLYNTNSVIKTFCVVTE*TRLENLS*LERKTVTTH 116
L + H T T+T +S + S + + NT+ V T V+ T+ E T T H
Sbjct: 2048 LTHTKTHAT--TETKVSTATSTSVLTTTNTHHVTSTSTTVSTATKTET------TTATHH 2099
Query: 115 VTALE*INTNVFMKKKTV 62
T LE I + + TV
Sbjct: 2100 TTKLEEITSTAIVTSPTV 2117
>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 577
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACK 495
CP + + G SCY S + W +A CK
Sbjct: 156 CPRFYSKYGDSCYRMSYIKLPWSEAREVCK 185
>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
Length = 129
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
C S+ CYF S E W A +C+ R S L
Sbjct: 2 CDSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTL 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,951
Number of Sequences: 59808
Number of extensions: 312858
Number of successful extensions: 738
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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