Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1308
(561 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77133-6|CAB00869.1| 338|Caenorhabditis elegans Hypothetical pr... 32 0.25
Z69794-6|CAA93683.1| 338|Caenorhabditis elegans Hypothetical pr... 32 0.25
Z79759-3|CAB02136.1| 225|Caenorhabditis elegans Hypothetical pr... 30 1.3
U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical pr... 29 1.7
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 29 2.3
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 29 2.3
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z82051-4|CAB04818.2| 339|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral signa... 27 7.0
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 27 9.2
U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical pr... 27 9.2
U28730-4|AAO38621.1| 228|Caenorhabditis elegans Hypothetical pr... 27 9.2
U28730-3|AAO38622.1| 243|Caenorhabditis elegans Hypothetical pr... 27 9.2
DQ340628-1|ABC65816.1| 228|Caenorhabditis elegans chondroitin p... 27 9.2
>Z77133-6|CAB00869.1| 338|Caenorhabditis elegans Hypothetical
protein R03G8.5 protein.
Length = 338
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -3
Query: 325 LLQPIVFSRNLPYFNVHLTLQTDTTLSCSHSQFIFSLYNTNSVIKTFCVVTE 170
LL P+ F LP+FN+ +L T LS +F+LY T + VVTE
Sbjct: 255 LLTPLSFIIYLPFFNIKCSLPTGVLLS------LFTLYPTADSVVVIYVVTE 300
>Z69794-6|CAA93683.1| 338|Caenorhabditis elegans Hypothetical
protein R03G8.5 protein.
Length = 338
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -3
Query: 325 LLQPIVFSRNLPYFNVHLTLQTDTTLSCSHSQFIFSLYNTNSVIKTFCVVTE 170
LL P+ F LP+FN+ +L T LS +F+LY T + VVTE
Sbjct: 255 LLTPLSFIIYLPFFNIKCSLPTGVLLS------LFTLYPTADSVVVIYVVTE 300
>Z79759-3|CAB02136.1| 225|Caenorhabditis elegans Hypothetical
protein ZK858.3 protein.
Length = 225
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP ++R SCYF + KA C D+ + L
Sbjct: 78 CPDGWLRYSDSCYFIETESLGFAKAERKCHDKQATL 113
>U61946-5|AAC24389.1| 391|Caenorhabditis elegans Hypothetical
protein F47C12.2 protein.
Length = 391
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 388 TKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
T + CP +IR G CY + +W A+ C+ S L
Sbjct: 42 TDVELTCPDDWIRHGTKCYLPFNIHQSWPFAMTTCQRYGSTL 83
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 382 NSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDS 507
+S + CP + I SCY F T W A C + +S
Sbjct: 44 SSVPATATCPKNSIYYMGSCYVFDTTLRNWNDAALYCNNMNS 85
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 382 NSTKMSYVCPPSFIRLGHSCYFFSDTEATWQKALFACKDRDS 507
+S + CP + I SCY F T W A C + +S
Sbjct: 44 SSVPATATCPKNSIYYMGSCYVFDTTLRNWNDAALYCNNMNS 85
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 376 QRNSTKMSYVCPPSFIRLGH----SCYFFSDTEATWQKALFACKDRDSIL 513
+ N++ + CP + + GH SC+ F + T+ +A+ C++ D+ +
Sbjct: 2689 ESNTSLIEGDCPAGWFQAGHEEFKSCFLFVPSAVTFSRAVEYCEELDAFV 2738
>Z82051-4|CAB04818.2| 339|Caenorhabditis elegans Hypothetical
protein T23D5.7 protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -3
Query: 325 LLQPIVFSRNLPYFNVHLTLQTDTTLSCSHSQFIFSLYNTNSVIKTFCVVTE 170
L PI++ ++P+FN+ +++ T LS +F+LY V+T+
Sbjct: 264 LFSPIIYIISVPFFNIEVSVPTGVFLS------VFTLYPALDAFIIMYVITD 309
>AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral
signaling target protein 2 protein.
Length = 661
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Frame = +2
Query: 284 EIWQIPREDDWLQQPPSY*LSSGLN-----AEAWRRREIAQRCRTCVRLLLSGSD 433
+IW PR DDW+ Y S LN +++ R RC V L D
Sbjct: 6 KIWNKPRPDDWMPLARFYYADSALNDIASELDSFDGRRDPDRCNALVTRLRVAQD 60
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 286 FNVHLTLQTDTTLSCS-HSQFIFSLYNTNSVIKTFCVVT 173
F V++ L T TLS + + F+ + YN SV+ C+ T
Sbjct: 94 FPVNIILLTIFTLSAAVMTMFVTACYNVQSVLICLCITT 132
>U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical
protein C25B8.4c protein.
Length = 145
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP ++R SCY+ + ++ +A C ++++ L
Sbjct: 58 CPDGWVRFSDSCYWIEQHKQSFAEAEKRCYEKNATL 93
>U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical
protein C25B8.4b protein.
Length = 248
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP ++R SCY+ + ++ +A C ++++ L
Sbjct: 94 CPDGWVRFSDSCYWIEQHKQSFAEAEKRCYEKNATL 129
>U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical
protein C25B8.4a protein.
Length = 212
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP ++R SCY+ + ++ +A C ++++ L
Sbjct: 58 CPDGWVRFSDSCYWIEQHKQSFAEAEKRCYEKNATL 93
>U28730-4|AAO38621.1| 228|Caenorhabditis elegans Hypothetical
protein K10B2.3a protein.
Length = 228
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP +IR SCY+ + KA C ++ S L
Sbjct: 81 CPEGWIRYSDSCYWVETELLGFAKAERKCSEKQSTL 116
>U28730-3|AAO38622.1| 243|Caenorhabditis elegans Hypothetical
protein K10B2.3b protein.
Length = 243
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP +IR SCY+ + KA C ++ S L
Sbjct: 81 CPEGWIRYSDSCYWVETELLGFAKAERKCSEKQSTL 116
>DQ340628-1|ABC65816.1| 228|Caenorhabditis elegans chondroitin
proteoglycan-6 protein.
Length = 228
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 406 CPPSFIRLGHSCYFFSDTEATWQKALFACKDRDSIL 513
CP +IR SCY+ + KA C ++ S L
Sbjct: 81 CPEGWIRYSDSCYWVETELLGFAKAERKCSEKQSTL 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,212,738
Number of Sequences: 27780
Number of extensions: 239018
Number of successful extensions: 600
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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