Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1308
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 277 HLTLQTDTTLSCSHSQFIFSLYNTNSVIKTFC 182
           HL  +   TLS S+S ++ S+Y + +   T C
Sbjct: 363 HLHYRQPPTLSESYSSYVNSMYASGAQFATPC 394


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 20  RTYRDTLETNNQISNGFLFHENIRVNLLKCC 112
           + YR  +   N+I    LF  N R+  L  C
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFC 270


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 119 SCYSFSLQLTQVFQSSSFSY-NTKCLD 196
           S YSF  +L  +F SSS  + +T  LD
Sbjct: 477 SIYSFLERLNLIFMSSSLQWSSTHTLD 503


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 119 SCYSFSLQLTQVFQSSSFSY-NTKCLD 196
           S YSF  +L  +F SSS  + +T  LD
Sbjct: 515 SIYSFLERLNLIFMSSSLQWSSTHTLD 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,614
Number of Sequences: 438
Number of extensions: 2626
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)