BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1308 (561 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g32240.1 68414.m03966 myb family transcription factor (KAN2) ... 30 0.92 At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 2.1 At1g08280.1 68414.m00914 glycosyl transferase family 29 protein ... 27 6.5 At3g24460.1 68416.m03069 TMS membrane family protein / tumour di... 27 8.6 At3g21950.1 68416.m02769 S-adenosyl-L-methionine:carboxyl methyl... 27 8.6 At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger) fa... 27 8.6 At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger) fa... 27 8.6 >At1g32240.1 68414.m03966 myb family transcription factor (KAN2) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA GARP-like putative transcription factor KANADI2 (KAN2) GI:15723594 Length = 388 Score = 30.3 bits (65), Expect = 0.92 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 167 NSTGKPELTGEKNCNNSRNST*VN*HECFHEKENRSKF 54 +ST P LTG N N+ + + N H H+ NR++F Sbjct: 164 SSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRARF 201 >At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1189 Score = 29.1 bits (62), Expect = 2.1 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = +2 Query: 50 NQISNGF---LFHENIRVNLLKCCYVSCYSFSLQLTQVFQS 163 NQ+S+ F +F ENI+ N + YS LQL Q+F S Sbjct: 279 NQLSHSFQLSVFMENIKANYTRPTGSDDYSAKLQLQQMFMS 319 >At1g08280.1 68414.m00914 glycosyl transferase family 29 protein / sialyltransferase family protein contains Pfam profile: PF00777 sialyltransferase (Glycosyltransferase family 29) Length = 398 Score = 27.5 bits (58), Expect = 6.5 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 450 EEIAAVSEPDKRRRTHVRHLCAISLR 373 +E+ +S+ D RR+H RH ++S+R Sbjct: 72 QEVDLISDYDHTRRSHRRHFSSMSIR 97 >At3g24460.1 68416.m03069 TMS membrane family protein / tumour differentially expressed (TDE) family protein contains Pfam domain, PF03348: TMS membrane protein/tumour differentially expressed protein (TDE) Length = 409 Score = 27.1 bits (57), Expect = 8.6 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 362 EAWRRREIAQRCRTCVRLLLSGSDTAAISSVIL 460 E ++ ++ A+RCR V LL + S T I VIL Sbjct: 176 ECYQSQKDAERCRVYVMLLSTTSYTVCIVGVIL 208 >At3g21950.1 68416.m02769 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) [GI:6002712][Clarkia breweri] and to SAM:benzoic acid carboxyl methyltransferase (BAMT)[GI:9789277][Antirrhinum majus] Length = 335 Score = 27.1 bits (57), Expect = 8.6 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +2 Query: 74 FHENIRVNLLKCCYVSCYSFSLQLTQVFQSSS--FSYNTKCLDY 199 FHE +++N+ CYVS S T++F S S F +++ CL + Sbjct: 77 FHEKLKMNVKGNCYVSGCPGSF-YTRLFPSKSLHFVHSSFCLHW 119 >At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 265 Score = 27.1 bits (57), Expect = 8.6 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +3 Query: 177 TTQNVLITELVL*SENMNC--ECEQLSVVSVCRVK*TLKYGRFREKTIGCNSRHLTDCLL 350 TT+N L+ +E C EC+ ++ S C +LKY + CN + T C + Sbjct: 42 TTENEEEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEI 101 Query: 351 VSMPRRGG 374 P + G Sbjct: 102 CHQPYQAG 109 >At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 265 Score = 27.1 bits (57), Expect = 8.6 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +3 Query: 177 TTQNVLITELVL*SENMNC--ECEQLSVVSVCRVK*TLKYGRFREKTIGCNSRHLTDCLL 350 TT+N L+ +E C EC+ ++ S C +LKY + CN + T C + Sbjct: 42 TTENEEEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEI 101 Query: 351 VSMPRRGG 374 P + G Sbjct: 102 CHQPYQAG 109 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,351,640 Number of Sequences: 28952 Number of extensions: 215312 Number of successful extensions: 513 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 513 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1072696904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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