Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1307
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.2  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 377 RAAADQNAGETRVTTPXRYAQXAFXRIQP 463
           +  A+ N G    TTP  +AQ +  RI+P
Sbjct: 307 KTVANTNVGSKNGTTPRSFAQKSSKRIKP 335


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 212 RLGSQVKRKQSYSFAYYKECQFFTGRVLHEEGSAV 316
           R+G  V+    Y F    +  + TG+ LH  G  V
Sbjct: 249 RMGQPVEVASCYLFLACSDGGYMTGQTLHPNGGTV 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,439
Number of Sequences: 5004
Number of extensions: 30817
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)