Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1307
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3)                       30   1.0  
SB_34568| Best HMM Match : Ribosomal_L41 (HMM E-Value=2.3)             29   1.8  
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       29   2.4  
SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)                   29   3.1  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           28   4.1  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.6  
SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)                   27   9.6  

>SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 218 PTEESQ---VMSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASC 48
           P EE     V S L++  + R  +Q   R C     DDR   R +  E A+ G C     
Sbjct: 191 PAEEGACAVVRSSLKMIDIRRVRRQMSMRSCAKLAKDDRYSTRTQAEEHAQLGACAVVRS 250

Query: 47  ASLWVAVRR 21
           +   + +RR
Sbjct: 251 SLKMIDIRR 259


>SB_34568| Best HMM Match : Ribosomal_L41 (HMM E-Value=2.3)
          Length = 221

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
 Frame = -1

Query: 218 PTEESQ---VMSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASC 48
           P EE     V S L+   + R  +Q   R C     DDR   R    E A+ G C     
Sbjct: 78  PAEEGACAVVRSSLKTIDIRRVRRQRSMRSCAKLTKDDRYSTRTPAEEHAQLGACAVVRS 137

Query: 47  ASLWVAVRRAAL 12
           +   + +RR  L
Sbjct: 138 SLKMIDIRRVRL 149


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -1

Query: 200 VMSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASCASLWVAVRR 21
           V S L+   + R  +Q   R C     DDR   R    E A+ G C     +   + +RR
Sbjct: 338 VRSSLKTIDIRRVRRQRSMRSCAKVAKDDRYSTRTPAEEYAQLGACAVVRSSLKMIDIRR 397


>SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)
          Length = 429

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 403 SCVLVGCSTNSSPPDLQQP 347
           SCV+ G STN S P  QQP
Sbjct: 237 SCVVPGISTNGSTPTAQQP 255


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 185 RVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASCASLW 36
           +VS   RS+  G+   CP   A+ RE  +QR   + +    VA + +++W
Sbjct: 273 KVSYEVRSDCSGIPSSCPAEKAETRELCKQRYQISKQGNYAVAGTRSAVW 322


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 73  CRAASGPRCLCSSRSSAPAPGHRRDSPCCSLRD 171
           C  A G +C C   +  P  G    SP C+  D
Sbjct: 785 CHYAPGKQCWCVDENGNPISGTMAKSPNCTTSD 817


>SB_48661| Best HMM Match : rve (HMM E-Value=5.7e-17)
          Length = 745

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 139 RRDSPCCSLRDIADTRKKLITCDSSVGISS*KKTKLFVRLL 261
           RR++ CC  + I D  +  I  D   GIS+    +  VR +
Sbjct: 339 RRNASCCICKQIYDKHRVQIRTDRKRGISNHVSPRALVRFI 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,114,355
Number of Sequences: 59808
Number of extensions: 288230
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)