Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1307
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-3|CAA20935.2|  740|Caenorhabditis elegans Hypothetical ...    28   4.8  
U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    27   8.3  

>AL031621-3|CAA20935.2|  740|Caenorhabditis elegans Hypothetical
           protein F28H6.6 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 13  SAARRTATHREAQLAATHGPCRAASGPRCLCSSRSSAPAPGHRRDSP 153
           S AR T T        +   C A +   C  S+R  + A G R+D P
Sbjct: 12  STARTTVTKSTGNFRRSARHCSAPTLTYCPSSTRKKSSAAGTRKDDP 58


>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 197 MSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRGPEAARHGPCVAASCASL 39
           MS L +SA + S  +   + C G G   ++    R  E + H  C+  SC  L
Sbjct: 1   MSLLLISATTSSTTE--DKLCSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,593,696
Number of Sequences: 27780
Number of extensions: 198579
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)