Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1307
(527 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SD... 31 0.36
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote... 30 1.1
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote... 30 1.1
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 30 1.1
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 30 1.1
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 30 1.1
At1g79110.2 68414.m09225 expressed protein 28 3.4
At1g79110.1 68414.m09224 expressed protein 28 3.4
At5g13460.1 68418.m01549 calmodulin-binding family protein low s... 28 4.5
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 27 5.9
At4g32900.2 68417.m04682 expressed protein 27 7.8
At4g32900.1 68417.m04681 expressed protein 27 7.8
At2g22690.1 68415.m02689 expressed protein 27 7.8
At1g65380.1 68414.m07417 receptor-like protein CLAVATA2 (CLV2) i... 27 7.8
>At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SDR)
family protein C-terminal similar to dormancy related
protein GI:1220178 from [Trollius ledebourii]
Length = 288
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 194 SSLATPRLGSQVKRKQSYSFAYYKECQ-FFTGRVLHEEGSAV 316
S + R G ++ SY F C +FTG+VLH G AV
Sbjct: 244 SEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAV 285
>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 67 GPCRAASGPRCLCSSRSSAPAPGH 138
GP R A+GPR L SSRSS P H
Sbjct: 146 GPTRRAAGPRSLVSSRSS-PTGSH 168
>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 67 GPCRAASGPRCLCSSRSSAPAPGH 138
GP R A+GPR L SSRSS P H
Sbjct: 146 GPTRRAAGPRSLVSSRSS-PTGSH 168
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 67 GPCRAASGPRCLCSSRSSAPAPGH 138
GP R A+GPR L SSRSS P H
Sbjct: 146 GPTRRAAGPRSLVSSRSS-PTGSH 168
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 67 GPCRAASGPRCLCSSRSSAPAPGH 138
GP R A+GPR L SSRSS P H
Sbjct: 146 GPTRRAAGPRSLVSSRSS-PTGSH 168
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 67 GPCRAASGPRCLCSSRSSAPAPGH 138
GP R A+GPR L SSRSS P H
Sbjct: 146 GPTRRAAGPRSLVSSRSS-PTGSH 168
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 127 PAPTTARSRDSAAQRQHGMVRASPRAA 47
P PT RSRDS+ H ++ +PR++
Sbjct: 95 PLPTRKRSRDSSRSNYHHLLLQNPRSS 121
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 127 PAPTTARSRDSAAQRQHGMVRASPRAA 47
P PT RSRDS+ H ++ +PR++
Sbjct: 95 PLPTRKRSRDSSRSNYHHLLLQNPRSS 121
>At5g13460.1 68418.m01549 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 443
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 170 TSQTRARNSSLATPRLGSQVKRKQSYSFAYYKECQFFTGRVLHEEGSAVTV 322
T +A++ SL++PR+ + QS S++ YK T ++ E S V +
Sbjct: 335 TESAKAKSRSLSSPRIRPRSFDTQSESYSPYKNKLCLTTSMMSEAPSKVRI 385
>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
profile PF00856: SET domain
Length = 2326
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 254 RTNSFVFF*LEIPTEESQVMSFLRVSAMSRSEQQGLSRRCPGAGADDREEQRQRG 90
+ N+F FF L++ E ++ + VS RS ++ +SR C A D+ + Q G
Sbjct: 1414 KQNTFDFFALKVSQIEEKMKNGYYVSHGLRSVKEDISRMCREAIKDELMKSWQDG 1468
>At4g32900.2 68417.m04682 expressed protein
Length = 139
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -3
Query: 66 VRRRELRLSVGRGAARCAHAST 1
V R++L++ G+ A++CAHA+T
Sbjct: 84 VVRQDLKMRTGKIASQCAHAAT 105
>At4g32900.1 68417.m04681 expressed protein
Length = 143
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -3
Query: 66 VRRRELRLSVGRGAARCAHAST 1
V R++L++ G+ A++CAHA+T
Sbjct: 84 VVRQDLKMRTGKIASQCAHAAT 105
>At2g22690.1 68415.m02689 expressed protein
Length = 381
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 408 VSPAFWSAAARTLHRQTCSSPYSCPSHSVTVTAEPSS 298
+SP W+ AA+ L RQ C P ++VT S
Sbjct: 244 LSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGS 280
>At1g65380.1 68414.m07417 receptor-like protein CLAVATA2 (CLV2)
identical to receptor-like protein CLAVATA2 [Arabidopsis
thaliana] gi|6049566|gb|AAF02654contains leucine
rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611;
Length = 720
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 361 DLQQPVQLSVTFGNRHSGALFMKHASRKKLTFLIISE 251
D QQP+ + N+ SG L +ASR L+ L I+E
Sbjct: 213 DFQQPLVVLNLASNQFSGTLPCFYASRPSLSILNIAE 249
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,352
Number of Sequences: 28952
Number of extensions: 182445
Number of successful extensions: 538
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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