Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1306
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 95 9e-21
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 49 6e-07
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 43 4e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 35 0.011
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 32 0.057
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.17
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.30
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.40
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 28 1.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 6.5
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 6.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 94.7 bits (225), Expect = 9e-21
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 APIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 432
APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+RYFPTQ
Sbjct: 46 APIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQ 105
Query: 433 ALNFAFKDKYKQVF 474
ALNFAFKDK+K++F
Sbjct: 106 ALNFAFKDKFKKMF 119
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 200 FAKDFLAGGISAAVSKTAEHP 262
F DF+ GG+SAAVSKTA P
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAP 47
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 301 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 480
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 481 G 483
G
Sbjct: 226 G 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 48.8 bits (111), Expect = 6e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R FP A
Sbjct: 39 SPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGA 91
Query: 436 LNFAFKDKYKQ 468
+ FA + KQ
Sbjct: 92 VQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 328 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 444
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 42.7 bits (96), Expect = 4e-05
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
AP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R FP
Sbjct: 36 APLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYRVFPYAG 94
Query: 436 LNFAFKDKYKQVFLGGVDKKT 498
+ F ++ ++V + + +T
Sbjct: 95 IKFVAYEQVRRVLIRDPEHET 115
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P+ A+
Sbjct: 355 PLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAI 411
Query: 439 NFAFKDKYKQ 468
++ + K+
Sbjct: 412 SYLVYENCKK 421
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVIRYFPTQA 435
P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++ FP A
Sbjct: 248 PVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPYSA 303
Query: 436 LNFAFKDKYKQVFLG 480
+ + K+ ++G
Sbjct: 304 TDLGTFEGLKRTWIG 318
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 328 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 474
Y G D +I K +G +RG ++ P +AL FA D Y +++
Sbjct: 45 YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
Score = 29.9 bits (64), Expect = 0.30
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 PIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+ A
Sbjct: 124 PFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNA 176
Query: 436 LNFAFKDKYK 465
F K +
Sbjct: 177 GYFGVIQKIR 186
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 439 NFAFKDKYKQV 471
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 301 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 444
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 313 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 492
A Y DAF +I K +GL +F+RG F ++ + F + +K K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283
Query: 493 KTQF 504
K+ F
Sbjct: 284 KSNF 287
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 426
AP++ VK Q Q + G + + I +G+ +RG ++ Y P
Sbjct: 24 APLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYLP 83
Query: 427 TQALNFAFKDKYKQVFLGGVDKK 495
+ ++ F +K K +F GV+KK
Sbjct: 84 SWSIYFVVYEKCKVLF--GVNKK 104
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Frame = +1
Query: 283 LQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP---TQALNFAF 450
+QV K + A K + D + G + FW G F + + F AL
Sbjct: 195 MQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLHLADALCLGV 254
Query: 451 KDKYKQVFLGGVDKKT 498
VF G+D+KT
Sbjct: 255 SANGDMVFSSGIDRKT 270
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 49 YEITPNLLFKNQELVFRDPPSACAATPTSTY 141
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 579 SRGTRSTERWLRRHHRRPDYQRSKP 505
SR +RS R HR DY RS P
Sbjct: 155 SRSSRSRHPSSRSRHRYDDYSRSPP 179
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 337 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 429
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,467
Number of Sequences: 5004
Number of extensions: 42691
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -