Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1306
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 3e-19
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 6e-11
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 45 6e-05
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 44 1e-04
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.002
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.003
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 37 0.015
SB_16027| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 37 0.015
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.019
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.026
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 36 0.034
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.059
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 35 0.059
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.18
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.42
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 31 0.55
SB_24472| Best HMM Match : I-set (HMM E-Value=0) 31 0.73
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.3
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 1.7
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.7
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.9
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_26302| Best HMM Match : Reg_prop (HMM E-Value=3.1e-06) 29 3.9
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 3.9
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 3.9
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 28 5.1
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 28 5.1
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 28 5.1
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 28 5.1
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 28 6.8
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 6.8
SB_59774| Best HMM Match : Phage_AlpA (HMM E-Value=6.8) 27 9.0
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.0
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 27 9.0
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 9.0
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 92.3 bits (219), Expect = 3e-19
Identities = 45/74 (60%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 APIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 432
APIERVKLL+Q Q + K D YKG++D R + +G LSFWRGN AN IRYFPTQ
Sbjct: 28 APIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIRYFPTQ 87
Query: 433 ALNFAFKDKYKQVF 474
ALNFAFKD+ K +F
Sbjct: 88 ALNFAFKDQVKALF 101
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +1
Query: 325 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 477
+YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/71 (40%), Positives = 49/71 (69%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN NVIR FP A
Sbjct: 53 SPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSA 106
Query: 436 LNFAFKDKYKQ 468
+ FA ++YK+
Sbjct: 107 VQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
AP++R+K+LLQVQ A+ GIV F + +E G+ S WRGN ANVI+ P
Sbjct: 155 APLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANVIKIAPESG 208
Query: 436 LNFAFKDKYKQVFLGGVDKK 495
+ F +K K+ L G D K
Sbjct: 209 IKFFAYEKAKK--LVGSDTK 226
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +1
Query: 283 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 462
L+V I +Y+G++ A I +++G+ SF+RG F +++ P ++ A +
Sbjct: 251 LEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETL 310
Query: 463 KQVFL 477
K +L
Sbjct: 311 KNFYL 315
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 283 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFA 447
L+V V Q+ + G++ F + K +G+ +FW+GN + IR FP A+ +A
Sbjct: 79 LEVVKVLAQVGTQEAKPGLIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYA 133
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 426
P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G + + FP
Sbjct: 172 PCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPSFLGLFP 224
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 256 APIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 393
APIERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 29 APIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
AP++ VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R P A
Sbjct: 52 APVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFA 110
Query: 436 LNF 444
+ F
Sbjct: 111 VYF 113
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 325 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 444
RYKG++D ++ KE+G++ F RG + ++R F Q L F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +1
Query: 325 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 468
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 310 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 474
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 340 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFW 507
+DA ++IP+ +GL S WRG ++ P + F D+ K + G + +T W
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK-ISYGFKNNETNLW 118
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 328 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 477
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
P++ K +Q + I YKG +D RI + +G+ + W+G R P L
Sbjct: 113 PVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVL 169
Query: 439 NFAFKDKYKQV---FLGG 483
F F ++ + F GG
Sbjct: 170 TFIFLEQLNRAANYFYGG 187
>SB_16027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = -2
Query: 609 TSAARRVRAKSRGTRSTERWLRRHHRRPDYQRSKPE 502
+S +RR RA++RG R T+RW R HH + ++R + E
Sbjct: 59 SSYSRRARAETRGDRETKRW-RIHHTQEGHERKQEE 93
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG ++ P +A+
Sbjct: 933 PIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEKAI 990
Query: 439 NFAFKDKYKQVF 474
D + +F
Sbjct: 991 KLTTNDFVRGIF 1002
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 337 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 471
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 396
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 396
P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 441 PCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 328 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF--LGGVDKKT 498
Y+G++ + KE+G+ +F+R + P Q L+F + ++ LGG D KT
Sbjct: 32 YRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKT 90
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
PI+ K +QVQ + Q A +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 439 NFAFKDKYKQV 471
F F + K +
Sbjct: 281 FFGFYEFTKNL 291
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 358 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 471
+P+E L W G F++VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
P++ VK Q + +Y G D +I G+ +F +G A ++R FPT A
Sbjct: 377 PVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATILRGFPTNA 435
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 358 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 471
+P+E +L W G ++VI F A+N F+D+YK++
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
P++ +K+ LQ + K +KG +D F++ + +GL ++G + ++ P+ AL
Sbjct: 40 PLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLRGLYKGMLSPLLMATPSTAL 98
Query: 439 NF 444
F
Sbjct: 99 TF 100
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 31.5 bits (68), Expect = 0.55
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
P E VK LQ+ + AA Y+G +D + K G+L +RG + + P ++
Sbjct: 60 PTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASV 115
Query: 439 NFAFKDKYKQVFLGGVDKKTQF 504
FA + K K TQF
Sbjct: 116 RFAVFEYLKNKMADENGKLTQF 137
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 234 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 100
A++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 538 ADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_24472| Best HMM Match : I-set (HMM E-Value=0)
Length = 473
Score = 31.1 bits (67), Expect = 0.73
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 378 ETLLLGDADEGVDDTLVTLVGGDLLADVL-YLEQQLDTLDGCSAVLETAAEIPPARKSLA 202
E L DA E V + + G D + + Y Q+DTL+G S L+ A+ P ++A
Sbjct: 169 ECLARNDAGEQVTEASLRYYGRDAVPQLTRYPRAQVDTLEGNSVTLQCRAQGRP-NPTIA 227
Query: 201 NATGSARFDI 172
A G D+
Sbjct: 228 WAKGGTPLDV 237
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 234 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 100
A++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1265 ADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 396
P + VK+ Q + + I YK + AF +I K++G L W G
Sbjct: 134 PTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTG 175
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 426
P E +K LQ QH + I+ K G++D ++I + G +RG A R P
Sbjct: 126 PAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVP 182
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 334 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 471
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 426
P++ V+ L VQ +S + ++ Y GIV A RI E+G+ ++G +++ P
Sbjct: 48 PLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAP 101
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 259 PIERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 396
P + +K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 49 PFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 438
P++ +K+ LQ + K YK D F +I + +G+ +RG ++ P +
Sbjct: 58 PLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPNTTV 116
Query: 439 NFA 447
F+
Sbjct: 117 LFS 119
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 380
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 380
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_26302| Best HMM Match : Reg_prop (HMM E-Value=3.1e-06)
Length = 117
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 334 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY--KQVFLGGVDKKTQFW 507
G++ + V ++ + W G + +Y N+ +D V G+DKK Q W
Sbjct: 17 GLIQSQVTAIEQDKMGHLWMGTIGGLAKYDGHTFTNYTIRDGLLNNSVTALGIDKKNQIW 76
Query: 508 L 510
+
Sbjct: 77 I 77
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 505 RTASSCQRRRGTPACTCP 452
R S CQRRRG C CP
Sbjct: 939 RFYSKCQRRRGGAQCVCP 956
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 380
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 361 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 477
P+E L W G ++VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 380
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 358 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 474
+P+E L + G ++VI F A+N F+++YK+VF
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVF 301
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 426
P++ +K LQ+ + + + Y GI+D +I +GL +F++G +I P
Sbjct: 225 PLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVIAP 277
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 358 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 471
+P+E +L + G ++VI F A+N FK++YK++
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKI 304
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 265 ERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 399
ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 286 ERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 7 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 150
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_59774| Best HMM Match : Phage_AlpA (HMM E-Value=6.8)
Length = 149
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 597 RRVRAKSRGTRSTERWLRRHHRRPDYQRSKPELR 496
R VRAK G WLR +P Y R KP +R
Sbjct: 79 RAVRAKGVGRERVAAWLR---GQPSYTRHKPYVR 109
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 55 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 165
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 AAPSTARQQADRRRPALQGYRRR-LRPHPQGAGSP 380
A+ S RQQ R RP +GY +R R +P+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 34 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 156
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,397,359
Number of Sequences: 59808
Number of extensions: 373308
Number of successful extensions: 1255
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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