Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1306
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   160   1e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   160   1e-41
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  160 bits (388), Expect = 1e-41
 Identities = 72/83 (86%), Positives = 78/83 (93%)
 Frame = +1

Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
           APIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQA
Sbjct: 29  APIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQA 88

Query: 436 LNFAFKDKYKQVFLGGVDKKTQF 504
           LNFAFKDKYKQVFLGGVDK TQF
Sbjct: 89  LNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 51.2 bits (117), Expect = 8e-09
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 173 MSNLADPVAFAKDFLAGGISAAVSKTAEHP 262
           MS LADPVAFAKDFLAGG++AA+SKT   P
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAP 30



 Score = 29.9 bits (64), Expect = 0.020
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 572 PLDFARTRLAADV 610
           PLDFARTRLAADV
Sbjct: 135 PLDFARTRLAADV 147



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 417
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 504 LAYFXXXXXXXXXXXXTSLCFVSPL 578
           L YF            TSLCFV PL
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPL 136



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 319 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKT 498
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +      KKT
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKT 210

Query: 499 QFWLT 513
            F ++
Sbjct: 211 PFLIS 215


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  160 bits (388), Expect = 1e-41
 Identities = 72/83 (86%), Positives = 78/83 (93%)
 Frame = +1

Query: 256 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 435
           APIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQA
Sbjct: 29  APIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQA 88

Query: 436 LNFAFKDKYKQVFLGGVDKKTQF 504
           LNFAFKDKYKQVFLGGVDK TQF
Sbjct: 89  LNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 51.2 bits (117), Expect = 8e-09
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 173 MSNLADPVAFAKDFLAGGISAAVSKTAEHP 262
           MS LADPVAFAKDFLAGG++AA+SKT   P
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAP 30



 Score = 29.9 bits (64), Expect = 0.020
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 572 PLDFARTRLAADV 610
           PLDFARTRLAADV
Sbjct: 135 PLDFARTRLAADV 147



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 259 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 417
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 504 LAYFXXXXXXXXXXXXTSLCFVSPL 578
           L YF            TSLCFV PL
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPL 136



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 319 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKT 498
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +      KKT
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKT 210

Query: 499 QFWLT 513
            F ++
Sbjct: 211 PFLIS 215


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 98  VIPHPRVPQLPPRHIHLVKIT 160
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,721
Number of Sequences: 438
Number of extensions: 3075
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)