Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1304
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    41   1e-04
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    40   2e-04
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    35   0.007
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    33   0.027
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    33   0.027
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    25   5.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +2

Query: 425 IENLIYTYTGSILVAVNPYXILPIYTAD 508
           + + IYTY+G  LVAVNPY  LPIYT D
Sbjct: 102 LSDQIYTYSGLFLVAVNPYCGLPIYTKD 129


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +2

Query: 428 ENLIYTYTGSILVAVNPYXILPIYTAD 508
           ++LIYTY+G  LVAVNPY  LPIY  D
Sbjct: 115 KDLIYTYSGLFLVAVNPYCHLPIYGDD 141



 Score = 24.6 bits (51), Expect = 9.5
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 259 GRRIRVR-DDDGNEQWLPPERRIKAMHATSVHGVEDMISLGDLHEAGILRNLLIRYN*KS 435
           G + RV+ + DG+E+ +      K ++      V+DM +L  L+E  ++ NL  RY  K 
Sbjct: 59  GEKYRVKLERDGSERIVDGFDAEK-VNPPKFDMVDDMAALTCLNEPSVVNNLTQRYE-KD 116

Query: 436 YLYIH 450
            +Y +
Sbjct: 117 LIYTY 121


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 437 IYTYTGSILVAVNPYXILPIYTAD 508
           IYTY G +L++VNP+  L IYT D
Sbjct: 69  IYTYIGHVLISVNPFRDLGIYTMD 92


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 14/23 (60%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +2

Query: 437 IYTYTGSILVAVNPYXILP-IYT 502
           IYTY+G +L+AVNP+  LP +YT
Sbjct: 102 IYTYSGIVLIAVNPFQRLPNLYT 124


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 437 IYTYTGSILVAVNPYXILPIYTAD 508
           IYTY+G +LV++NPY  LP +  D
Sbjct: 94  IYTYSGIVLVSINPYQNLPEFYND 117


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 250 RGEGRRIRVRDDDGNEQWLPPERRIKAMHATSVHGVEDM 366
           RG GRR   RD++  ++W+P  +  + + A  +  +E++
Sbjct: 19  RGRGRRGAKRDEE--KEWVPVTKLGRLVKAGKIKSIEEI 55


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 229 HVELPPRHRLDPYVIAPGHDHH 164
           H  LPP   +DP  +A  H+ H
Sbjct: 187 HSSLPPHMGVDPSTMADAHNAH 208


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 449 TGSILVAVNPYXILPIYTADRSNCSRR 529
           T +I VA  PY +LP Y+ D S   +R
Sbjct: 175 TQAIDVANTPYELLPDYSPDMSVLDKR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,879
Number of Sequences: 5004
Number of extensions: 37158
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)