BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1304 (536 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 61 6e-10 SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04 SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001 SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17) 40 0.001 SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002 SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 38 0.004 SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009 SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 36 0.021 SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 36 0.021 SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 35 0.048 SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11 SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 33 0.20 SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45 SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45 SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 30 1.0 SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 30 1.4 SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 28 5.6 SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 27 7.3 SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07) 27 7.3 SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 >SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) Length = 1189 Score = 60.9 bits (141), Expect = 6e-10 Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Frame = +1 Query: 256 EGRRIRVRDDDGNEQWLPPE--RRIKAMHATSVHGVEDMISLGDLHEAGILRNLLIRYN- 426 +G + + DD+G E + +K MH +SV GVE+MI LGDL EAGILRNLLIRY Sbjct: 798 QGASVILVDDEGKEVVIDRSVAESLKHMHPSSVEGVENMIELGDLDEAGILRNLLIRYRA 857 Query: 427 *KSYLYI 447 K Y Y+ Sbjct: 858 NKIYTYV 864 Score = 46.0 bits (104), Expect = 2e-05 Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 3/116 (2%) Frame = +2 Query: 161 IMVIVTRGDYIWIEPVSGREFDVAIGARVLAARDVXXXXXXXXXXXXXFHRSAXSRRCTR 340 +M +GD++W+E G E DVAIGA V + RS Sbjct: 767 LMAFKAQGDHVWLEAGDG-ENDVAIGACVKEVQGASVILVDDEGKEVVIDRSVAESLKHM 825 Query: 341 PPCTESRI*SHSAICTRPVY*GISSSGTIE---NLIYTYTGSILVAVNPYXILPIY 499 P + + + + GI + I N IYTY GS+LVAVNPY PIY Sbjct: 826 HPSSVEGVENMIELGDLDEA-GILRNLLIRYRANKIYTYVGSVLVAVNPYCSFPIY 880 >SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 884 Score = 42.3 bits (95), Expect = 2e-04 Identities = 20/33 (60%), Positives = 26/33 (78%) Frame = +2 Query: 410 SSSGTIENLIYTYTGSILVAVNPYXILPIYTAD 508 +S G +E++ TYTGSILVAVNPY + PIY A+ Sbjct: 33 TSIGGVEDM--TYTGSILVAVNPYQLYPIYDAE 63 Score = 39.9 bits (89), Expect = 0.001 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Frame = +1 Query: 265 RIRVRDDDGNEQWLPPER--RIKAMHATSVHGVEDMISLGDL 384 ++++ DD+G E W+ +++AMH TS+ GVEDM G + Sbjct: 6 QVQIIDDEGKEHWIKTTNATKLRAMHPTSIGGVEDMTYTGSI 47 >SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2033 Score = 40.3 bits (90), Expect = 0.001 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = +2 Query: 428 ENLIYTYTGSILVAVNPYXILPIYT 502 +++IYTY G IL+AVNP+ LPIY+ Sbjct: 32 QDIIYTYVGDILIAVNPFKTLPIYS 56 >SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17) Length = 546 Score = 40.3 bits (90), Expect = 0.001 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILPIYT 502 NLIYTY G+++V++NPY LPIY+ Sbjct: 50 NLIYTYIGTVVVSINPYKNLPIYS 73 >SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1278 Score = 39.5 bits (88), Expect = 0.002 Identities = 16/26 (61%), Positives = 19/26 (73%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILPIYTAD 508 N IYTY G +LVA+NPY LP+Y D Sbjct: 433 NAIYTYCGIVLVAINPYEELPLYGPD 458 >SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) Length = 1997 Score = 38.3 bits (85), Expect = 0.004 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = +2 Query: 434 LIYTYTGSILVAVNPYXILPIYT 502 LIYTY+G VA+NPY LPIYT Sbjct: 108 LIYTYSGLFCVAINPYRRLPIYT 130 >SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1805 Score = 37.1 bits (82), Expect = 0.009 Identities = 16/23 (69%), Positives = 17/23 (73%) Frame = +2 Query: 434 LIYTYTGSILVAVNPYXILPIYT 502 LIYTY+G V VNPY LPIYT Sbjct: 106 LIYTYSGLFCVVVNPYKRLPIYT 128 >SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) Length = 280 Score = 35.9 bits (79), Expect = 0.021 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = +2 Query: 437 IYTYTGSILVAVNPYXILPIY 499 IYTY G IL+AVNP+ PIY Sbjct: 175 IYTYVGEILLAVNPFRFFPIY 195 >SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) Length = 1017 Score = 35.9 bits (79), Expect = 0.021 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +2 Query: 437 IYTYTGSILVAVNPYXILPIYTAD 508 IYTY G+++V++NPY P+YT + Sbjct: 50 IYTYIGNVVVSINPYRKFPLYTRE 73 Score = 32.3 bits (70), Expect = 0.26 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN*KS-YLYIHRIDIS 465 GV DM+ L L E I+ NL RYN K+ Y YI + +S Sbjct: 22 GVSDMVLLEPLTEDAIMENLWDRYNAKAIYTYIGNVVVS 60 >SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) Length = 650 Score = 34.7 bits (76), Expect = 0.048 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +2 Query: 437 IYTYTGSILVAVNPYXILPIYTADR 511 IYTY G ++V+VNPY L IY D+ Sbjct: 38 IYTYIGEVVVSVNPYKTLNIYGDDK 62 >SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1926 Score = 33.5 bits (73), Expect = 0.11 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = +3 Query: 180 GAITYGSSRCRGGSSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSR 359 G G R R SS++ S SR + D G GR+R R + + + R+RSR Sbjct: 654 GGSRRGKRRSRSRSSSYSSRSR-SRSRSRDRGRGRKRSRRRSRSSSHSSSSLSRSRSRSR 712 Query: 360 GYDLTRRSARGR 395 RR +R R Sbjct: 713 SRGRGRRRSRSR 724 >SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) Length = 1035 Score = 32.7 bits (71), Expect = 0.20 Identities = 13/48 (27%), Positives = 30/48 (62%) Frame = +3 Query: 285 RRQRAMASTGAPXQGDARDLRARSRGYDLTRRSARGRYTKESPHPVQL 428 +R+ + S+G+ + D+RD RA+ R + ++ S + R ++ +P P ++ Sbjct: 966 QREYSDTSSGSEGESDSRDNRAKERASEKSKLSDKSRTSENTPDPKEI 1013 >SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 548 Score = 31.5 bits (68), Expect = 0.45 Identities = 26/79 (32%), Positives = 35/79 (44%) Frame = +3 Query: 177 PGAITYGSSRCRGGSSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARS 356 P Y S R R + RS SR + D P RRR R + +RD ++RS Sbjct: 200 PSPSPYRSRRSRSRTRRSRSRSRRSRSRSRDRRP-RRRSRDRERSRERRSRRSRD-KSRS 257 Query: 357 RGYDLTRRSARGRYTKESP 413 R R +RGR ++SP Sbjct: 258 REKSRERGGSRGRSAEKSP 276 Score = 31.1 bits (67), Expect = 0.60 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +3 Query: 255 RGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSRGYDLTRRSARGRYTKESPHP 419 R SD P R + S + R ++RS+ D +RRS Y++ SP P Sbjct: 150 RSRSDSRPRSRYRGRSRSRSRDRYRERRPRKSRSKSLDRSRRSRSRSYSRPSPSP 204 >SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1429 Score = 31.5 bits (68), Expect = 0.45 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILPIYTAD 508 N + TY G IL++VNPY L YT + Sbjct: 4 NFLQTYIGKILLSVNPYKQLDSYTPE 29 >SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) Length = 621 Score = 30.3 bits (65), Expect = 1.0 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +2 Query: 437 IYTYTGSILVAVNPYXIL 490 IYTY G+IL AVNPY + Sbjct: 25 IYTYIGTILCAVNPYSFI 42 >SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2463 Score = 30.3 bits (65), Expect = 1.0 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILPIYT 502 NLI+TY G ++ +NP L IYT Sbjct: 402 NLIHTYAGPNMIVINPQQQLAIYT 425 >SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) Length = 1977 Score = 29.9 bits (64), Expect = 1.4 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +2 Query: 437 IYTYTGSILVAVNPY-XILPIYTAD 508 IYTY +IL+AVNPY + +YT + Sbjct: 1854 IYTYVANILLAVNPYHEVKELYTKE 1878 >SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 609 Score = 28.3 bits (60), Expect = 4.2 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Frame = +3 Query: 195 GSSRCRG-GSSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSRGYDL 371 G+SR G G++ + H+ + P G + A +G P GD ++ S G + Sbjct: 465 GASRDEGRGNNLVSAGHMSPHSRSPRPPSGPLSKSAETQSGLPNDGDGKEKEKGSSGQSI 524 Query: 372 TRRSARGRYTKESPHPVQLKILFIH 446 R S R E H VQ + H Sbjct: 525 LRCSL-CRDKLEDTHFVQCPSIMHH 548 >SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) Length = 3810 Score = 27.9 bits (59), Expect = 5.6 Identities = 14/28 (50%), Positives = 14/28 (50%) Frame = +3 Query: 54 FASVQCLCLCHEEELNRACDSRQRINDQ 137 F Q LCLC E L CD R I DQ Sbjct: 3720 FDKEQGLCLCKRESLQNVCD-RDCIQDQ 3746 >SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) Length = 634 Score = 27.5 bits (58), Expect = 7.3 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 407 ISSSGTIENLIYTYTGSILVAVNPYXI 487 + GTI N++ YTG ++ V PY + Sbjct: 486 VRGHGTISNMLSGYTGELVPVVAPYGL 512 >SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07) Length = 413 Score = 27.5 bits (58), Expect = 7.3 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 407 ISSSGTIENLIYTYTGSILVAVNPYXILPIYTADR 511 I +G N+I G +L+ PY ++P+Y AD+ Sbjct: 188 IYCAGVWHNVILVLLGLLLLWSLPYLLVPLYMADQ 222 >SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3293 Score = 27.1 bits (57), Expect = 9.7 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +3 Query: 219 SSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSRG 362 S +W S+H+ TS R+ A S G + +LR R RG Sbjct: 467 SKSWPSDHLGDNSRTSGTNSDRQSWPAQHSPGHDPRSHDDELRERPRG 514 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,452,616 Number of Sequences: 59808 Number of extensions: 345354 Number of successful extensions: 944 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 844 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 942 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1215643300 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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