Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1304
(536 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 61 6e-10
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17) 40 0.001
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 38 0.004
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 36 0.021
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 36 0.021
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 35 0.048
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 33 0.20
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 30 1.0
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 30 1.4
SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 28 5.6
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 27 7.3
SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07) 27 7.3
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 60.9 bits (141), Expect = 6e-10
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Frame = +1
Query: 256 EGRRIRVRDDDGNEQWLPPE--RRIKAMHATSVHGVEDMISLGDLHEAGILRNLLIRYN- 426
+G + + DD+G E + +K MH +SV GVE+MI LGDL EAGILRNLLIRY
Sbjct: 798 QGASVILVDDEGKEVVIDRSVAESLKHMHPSSVEGVENMIELGDLDEAGILRNLLIRYRA 857
Query: 427 *KSYLYI 447
K Y Y+
Sbjct: 858 NKIYTYV 864
Score = 46.0 bits (104), Expect = 2e-05
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Frame = +2
Query: 161 IMVIVTRGDYIWIEPVSGREFDVAIGARVLAARDVXXXXXXXXXXXXXFHRSAXSRRCTR 340
+M +GD++W+E G E DVAIGA V + RS
Sbjct: 767 LMAFKAQGDHVWLEAGDG-ENDVAIGACVKEVQGASVILVDDEGKEVVIDRSVAESLKHM 825
Query: 341 PPCTESRI*SHSAICTRPVY*GISSSGTIE---NLIYTYTGSILVAVNPYXILPIY 499
P + + + + GI + I N IYTY GS+LVAVNPY PIY
Sbjct: 826 HPSSVEGVENMIELGDLDEA-GILRNLLIRYRANKIYTYVGSVLVAVNPYCSFPIY 880
>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +2
Query: 410 SSSGTIENLIYTYTGSILVAVNPYXILPIYTAD 508
+S G +E++ TYTGSILVAVNPY + PIY A+
Sbjct: 33 TSIGGVEDM--TYTGSILVAVNPYQLYPIYDAE 63
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +1
Query: 265 RIRVRDDDGNEQWLPPER--RIKAMHATSVHGVEDMISLGDL 384
++++ DD+G E W+ +++AMH TS+ GVEDM G +
Sbjct: 6 QVQIIDDEGKEHWIKTTNATKLRAMHPTSIGGVEDMTYTGSI 47
>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2033
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 428 ENLIYTYTGSILVAVNPYXILPIYT 502
+++IYTY G IL+AVNP+ LPIY+
Sbjct: 32 QDIIYTYVGDILIAVNPFKTLPIYS 56
>SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)
Length = 546
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +2
Query: 431 NLIYTYTGSILVAVNPYXILPIYT 502
NLIYTY G+++V++NPY LPIY+
Sbjct: 50 NLIYTYIGTVVVSINPYKNLPIYS 73
>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 431 NLIYTYTGSILVAVNPYXILPIYTAD 508
N IYTY G +LVA+NPY LP+Y D
Sbjct: 433 NAIYTYCGIVLVAINPYEELPLYGPD 458
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 434 LIYTYTGSILVAVNPYXILPIYT 502
LIYTY+G VA+NPY LPIYT
Sbjct: 108 LIYTYSGLFCVAINPYRRLPIYT 130
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 434 LIYTYTGSILVAVNPYXILPIYT 502
LIYTY+G V VNPY LPIYT
Sbjct: 106 LIYTYSGLFCVVVNPYKRLPIYT 128
>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
Length = 280
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 437 IYTYTGSILVAVNPYXILPIY 499
IYTY G IL+AVNP+ PIY
Sbjct: 175 IYTYVGEILLAVNPFRFFPIY 195
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 35.9 bits (79), Expect = 0.021
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 437 IYTYTGSILVAVNPYXILPIYTAD 508
IYTY G+++V++NPY P+YT +
Sbjct: 50 IYTYIGNVVVSINPYRKFPLYTRE 73
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 352 GVEDMISLGDLHEAGILRNLLIRYN*KS-YLYIHRIDIS 465
GV DM+ L L E I+ NL RYN K+ Y YI + +S
Sbjct: 22 GVSDMVLLEPLTEDAIMENLWDRYNAKAIYTYIGNVVVS 60
>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 650
Score = 34.7 bits (76), Expect = 0.048
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 437 IYTYTGSILVAVNPYXILPIYTADR 511
IYTY G ++V+VNPY L IY D+
Sbjct: 38 IYTYIGEVVVSVNPYKTLNIYGDDK 62
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 33.5 bits (73), Expect = 0.11
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +3
Query: 180 GAITYGSSRCRGGSSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSR 359
G G R R SS++ S SR + D G GR+R R + + + R+RSR
Sbjct: 654 GGSRRGKRRSRSRSSSYSSRSR-SRSRSRDRGRGRKRSRRRSRSSSHSSSSLSRSRSRSR 712
Query: 360 GYDLTRRSARGR 395
RR +R R
Sbjct: 713 SRGRGRRRSRSR 724
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 285 RRQRAMASTGAPXQGDARDLRARSRGYDLTRRSARGRYTKESPHPVQL 428
+R+ + S+G+ + D+RD RA+ R + ++ S + R ++ +P P ++
Sbjct: 966 QREYSDTSSGSEGESDSRDNRAKERASEKSKLSDKSRTSENTPDPKEI 1013
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 31.5 bits (68), Expect = 0.45
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 177 PGAITYGSSRCRGGSSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARS 356
P Y S R R + RS SR + D P RRR R + +RD ++RS
Sbjct: 200 PSPSPYRSRRSRSRTRRSRSRSRRSRSRSRDRRP-RRRSRDRERSRERRSRRSRD-KSRS 257
Query: 357 RGYDLTRRSARGRYTKESP 413
R R +RGR ++SP
Sbjct: 258 REKSRERGGSRGRSAEKSP 276
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 255 RGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSRGYDLTRRSARGRYTKESPHP 419
R SD P R + S + R ++RS+ D +RRS Y++ SP P
Sbjct: 150 RSRSDSRPRSRYRGRSRSRSRDRYRERRPRKSRSKSLDRSRRSRSRSYSRPSPSP 204
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 431 NLIYTYTGSILVAVNPYXILPIYTAD 508
N + TY G IL++VNPY L YT +
Sbjct: 4 NFLQTYIGKILLSVNPYKQLDSYTPE 29
>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 621
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 437 IYTYTGSILVAVNPYXIL 490
IYTY G+IL AVNPY +
Sbjct: 25 IYTYIGTILCAVNPYSFI 42
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 431 NLIYTYTGSILVAVNPYXILPIYT 502
NLI+TY G ++ +NP L IYT
Sbjct: 402 NLIHTYAGPNMIVINPQQQLAIYT 425
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 437 IYTYTGSILVAVNPY-XILPIYTAD 508
IYTY +IL+AVNPY + +YT +
Sbjct: 1854 IYTYVANILLAVNPYHEVKELYTKE 1878
>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 195 GSSRCRG-GSSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSRGYDL 371
G+SR G G++ + H+ + P G + A +G P GD ++ S G +
Sbjct: 465 GASRDEGRGNNLVSAGHMSPHSRSPRPPSGPLSKSAETQSGLPNDGDGKEKEKGSSGQSI 524
Query: 372 TRRSARGRYTKESPHPVQLKILFIH 446
R S R E H VQ + H
Sbjct: 525 LRCSL-CRDKLEDTHFVQCPSIMHH 548
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 54 FASVQCLCLCHEEELNRACDSRQRINDQ 137
F Q LCLC E L CD R I DQ
Sbjct: 3720 FDKEQGLCLCKRESLQNVCD-RDCIQDQ 3746
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 407 ISSSGTIENLIYTYTGSILVAVNPYXI 487
+ GTI N++ YTG ++ V PY +
Sbjct: 486 VRGHGTISNMLSGYTGELVPVVAPYGL 512
>SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07)
Length = 413
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 407 ISSSGTIENLIYTYTGSILVAVNPYXILPIYTADR 511
I +G N+I G +L+ PY ++P+Y AD+
Sbjct: 188 IYCAGVWHNVILVLLGLLLLWSLPYLLVPLYMADQ 222
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 219 SSTWRSEHVFSRRGTSDPGPGRRRQRAMASTGAPXQGDARDLRARSRG 362
S +W S+H+ TS R+ A S G + +LR R RG
Sbjct: 467 SKSWPSDHLGDNSRTSGTNSDRQSWPAQHSPGHDPRSHDDELRERPRG 514
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,616
Number of Sequences: 59808
Number of extensions: 345354
Number of successful extensions: 944
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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