Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1304
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.65 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 186 ITYGSSRCRGGSSTWRSEHVFSRRGTSDPGPG 281
           + YG  R + G  TW +  V   +G + PG G
Sbjct: 894 VPYGMQRGQSGGQTWSNSQV---QGVAVPGSG 922


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 289 RRRPGPGSDVPR 254
           RR PGPGS  PR
Sbjct: 55  RRNPGPGSKGPR 66


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 264 TSLAARTRAPIATSNSRPDTGSI 196
           TS+   TRA I T + +P+T  +
Sbjct: 129 TSIPYATRAEIKTESIQPETTKV 151


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 48 LLFASVQCLCLCHEEE 95
          LL ++V C+ LC E+E
Sbjct: 12 LLISAVFCVGLCSEDE 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,175
Number of Sequences: 438
Number of extensions: 2598
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)