BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1304 (536 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 38 0.003 At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 38 0.006 At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 38 0.006 At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:... 37 0.007 At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 37 0.007 At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 37 0.007 At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 37 0.007 At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 36 0.013 At4g28710.1 68417.m04106 myosin heavy chain, putative similar to... 36 0.013 At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 36 0.013 At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 36 0.013 At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 36 0.013 At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:... 35 0.030 At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 33 0.12 At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 33 0.12 At5g54280.1 68418.m06761 myosin heavy chain, putative similar to... 31 0.64 At3g04260.1 68416.m00450 SAP domain-containing protein contains ... 30 1.1 At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 29 1.5 At3g49800.1 68416.m05445 BSD domain-containing protein contains ... 29 2.6 At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 27 6.0 At2g27920.1 68415.m03384 serine carboxypeptidase S10 family prot... 27 6.0 >At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663 from (Arabidopsis thaliana) Length = 1520 Score = 38.3 bits (85), Expect = 0.003 Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 1/27 (3%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP-IYTAD 508 N IYTYTG+IL+AVNP+ LP IY D Sbjct: 86 NEIYTYTGNILIAVNPFQRLPHIYETD 112 Score = 34.3 bits (75), Expect = 0.052 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRY 423 GV+DM L LHE G+LRNL RY Sbjct: 60 GVDDMTKLSYLHEPGVLRNLETRY 83 >At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis thaliana] Length = 1505 Score = 37.5 bits (83), Expect = 0.006 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTGSIL+AVNP+ LP Sbjct: 89 NEIYTYTGSILIAVNPFRRLP 109 Score = 32.3 bits (70), Expect = 0.21 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GV+DM L LHE G+L+NL RY+ Sbjct: 63 GVDDMTRLAYLHEPGVLQNLHSRYD 87 >At1g04160.1 68414.m00406 myosin family protein contains Pfam profiles: PF02736 myosin N-terminal SH3-like domain, PF00063 myosin head (motor domain), PF00612 IQ calmodulin-binding motif, PF01843: DIL domain Length = 1500 Score = 37.5 bits (83), Expect = 0.006 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTGSIL+AVNP+ LP Sbjct: 89 NEIYTYTGSILIAVNPFRRLP 109 Score = 33.9 bits (74), Expect = 0.069 Identities = 15/25 (60%), Positives = 18/25 (72%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GVEDM L LHE G+L+NL RY+ Sbjct: 63 GVEDMTRLAYLHEPGVLQNLQSRYD 87 >At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana] Length = 1522 Score = 37.1 bits (82), Expect = 0.007 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +1 Query: 265 RIRVRDDDGNEQWLPPERRIKAMHATSVH-GVEDMISLGDLHEAGILRNLLIRY 423 ++ V G + ++ PE+ + H GV+DM L LHEAG+L NL RY Sbjct: 38 KLHVETSTGKKVFVSPEKLFRRDPDDEEHNGVDDMTKLTYLHEAGVLYNLQRRY 91 Score = 37.1 bits (82), Expect = 0.007 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTGSIL+AVNP+ LP Sbjct: 94 NDIYTYTGSILIAVNPFKKLP 114 >At3g58160.1 68416.m06485 myosin heavy chain, putative similar to myosin heavy chain [Arabidopsis thaliana] gi|602328|emb|CAA84067. Length = 1242 Score = 37.1 bits (82), Expect = 0.007 Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP-IYTAD 508 N IYTYTG+IL+AVNP+ LP +Y A+ Sbjct: 87 NEIYTYTGNILIAVNPFQGLPHLYDAE 113 Score = 32.7 bits (71), Expect = 0.16 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = +1 Query: 256 EGRRIRVRDDDGNEQWLPPERRIKAMHATSVHGVEDMISLGDLHEAGILRNLLIRY 423 +G ++ +DG + R GVEDM L LHE +L NL RY Sbjct: 29 KGEEAEIKTNDGRDVIANLSRLYPKDTEAPSEGVEDMTRLSYLHEPAVLDNLATRY 84 >At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663 from [Arabidopsis thaliana] Length = 1529 Score = 37.1 bits (82), Expect = 0.007 Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 1/26 (3%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP-IYTA 505 N IYTYTG+IL+A+NP+ LP IY A Sbjct: 92 NEIYTYTGNILIAINPFQRLPHIYDA 117 Score = 35.1 bits (77), Expect = 0.030 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRY 423 GV+DM L LHE G+L+NL IRY Sbjct: 66 GVDDMTKLSYLHEPGVLQNLKIRY 89 >At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis thaliana]; similar to ESTs gb|R30087 and gb|AA394762 Length = 1538 Score = 37.1 bits (82), Expect = 0.007 Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 1/26 (3%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP-IYTA 505 N IYTYTG+IL+A+NP+ LP IY A Sbjct: 97 NEIYTYTGNILIAINPFQRLPHIYDA 122 Score = 35.1 bits (77), Expect = 0.030 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRY 423 GV+DM L LHE G+L+NL IRY Sbjct: 71 GVDDMTKLSYLHEPGVLQNLKIRY 94 >At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana]; myosin-like protein my5, common sunflower, PIR:T14279 Length = 1545 Score = 36.3 bits (80), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTG+IL+AVNP+ LP Sbjct: 103 NEIYTYTGNILIAVNPFQRLP 123 Score = 33.9 bits (74), Expect = 0.069 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRY 423 GV+DM L LHE G+L NL +RY Sbjct: 77 GVDDMTKLSYLHEPGVLNNLAMRY 100 >At4g28710.1 68417.m04106 myosin heavy chain, putative similar to myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066. Length = 899 Score = 36.3 bits (80), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTG+IL+AVNP+ LP Sbjct: 88 NEIYTYTGNILIAVNPFRRLP 108 Score = 30.3 bits (65), Expect = 0.85 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GV+DM L LHE G+L+N+ R++ Sbjct: 62 GVDDMTRLAYLHEPGVLQNMKSRFD 86 >At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana]; myosin my5A (SP:Q02440) {Gallus gallus} Length = 1770 Score = 36.3 bits (80), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTG+IL+AVNP+ LP Sbjct: 105 NEIYTYTGNILIAVNPFKRLP 125 Score = 34.3 bits (75), Expect = 0.052 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GV+DM L LHE G+L NL RYN Sbjct: 79 GVDDMTKLAYLHEPGVLLNLKARYN 103 >At2g31900.1 68415.m03897 myosin family protein contains Pfam profiles: PF00063 myosin head (motor domain), PF01843 DIL domain, PF00612 IQ calmodulin-binding motif, PF02736 myosin N-terminal SH3-like domain Length = 1556 Score = 36.3 bits (80), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTG+IL+AVNP+ LP Sbjct: 89 NEIYTYTGNILIAVNPFQRLP 109 Score = 30.3 bits (65), Expect = 0.85 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRY 423 GV+DM L LHE G+L NL R+ Sbjct: 63 GVDDMTKLAYLHEPGVLHNLDCRF 86 >At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:499047) [Arabidopsis thaliana] Length = 1730 Score = 36.3 bits (80), Expect = 0.013 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 Query: 431 NLIYTYTGSILVAVNPYXILP 493 N IYTYTG+IL+AVNP+ LP Sbjct: 88 NEIYTYTGNILIAVNPFKRLP 108 Score = 34.3 bits (75), Expect = 0.052 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GV+DM L LHE G+L NL RYN Sbjct: 62 GVDDMTKLAYLHEPGVLLNLKCRYN 86 >At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:499047) [Arabidopsis thaliana] Length = 1493 Score = 35.1 bits (77), Expect = 0.030 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = +2 Query: 437 IYTYTGSILVAVNPYXILP 493 IYTYTG+IL+AVNP+ LP Sbjct: 101 IYTYTGNILIAVNPFKQLP 119 Score = 33.1 bits (72), Expect = 0.12 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRY 423 GV+DM +L LHE G+L+NL RY Sbjct: 73 GVDDMTTLAYLHEPGVLQNLKSRY 96 >At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin [Arabidopsis thaliana] GI:6491702; similar to myosin GI:6491702 from [Arabidopsis thaliana] ;contains Pfam profiles: PF00063: myosin head (motor domain), PF00612: IQ calmodulin-binding motif; identical to cDNA myosin (ATM) GI:297068 Length = 1166 Score = 33.1 bits (72), Expect = 0.12 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +2 Query: 428 ENLIYTYTGSILVAVNPYXILPIY 499 +++IYT G +LVAVNP+ +P+Y Sbjct: 191 QDMIYTKAGPVLVAVNPFKEVPLY 214 Score = 28.3 bits (60), Expect = 3.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GV+D++ L L+E +L NL RYN Sbjct: 166 GVDDLMQLSYLNEPSVLYNLNYRYN 190 >At1g50360.1 68414.m05645 myosin family protein contains Pfam profiles: PF00063 myosin head (motor domain), PF00612 IQ calmodulin-binding motif Length = 1153 Score = 33.1 bits (72), Expect = 0.12 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +2 Query: 428 ENLIYTYTGSILVAVNPYXILPIY 499 +++IYT G +LVAVNP+ +P+Y Sbjct: 183 QDMIYTKAGPVLVAVNPFKEVPLY 206 Score = 28.3 bits (60), Expect = 3.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 352 GVEDMISLGDLHEAGILRNLLIRYN 426 GV+D++ L L+E +L NL RYN Sbjct: 158 GVDDLMQLSYLNEPAVLYNLEYRYN 182 >At5g54280.1 68418.m06761 myosin heavy chain, putative similar to myosin [Arabidopsis thaliana] gi|499045|emb|CAA84065 Length = 1030 Score = 30.7 bits (66), Expect = 0.64 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 346 VHGVEDMISLGDLHEAGILRNLLIRY 423 + GVED+I L L+E +L NL +RY Sbjct: 23 LEGVEDLIQLSYLNEPSVLYNLRVRY 48 Score = 29.9 bits (64), Expect = 1.1 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +2 Query: 425 IENLIYTYTGSILVAVNPYXILPIYTAD 508 ++++IY+ G +L+AVNP+ + IY D Sbjct: 49 LQDVIYSKAGPVLIAVNPFKNVEIYGND 76 >At3g04260.1 68416.m00450 SAP domain-containing protein contains Pfam domain PF02037: SAP domain Length = 913 Score = 29.9 bits (64), Expect = 1.1 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +1 Query: 241 TCSRGEGRRIRVRDDDGNEQWLP--PERRIKAMHATSVHGVEDMISLGDL 384 T RG+ +DD +E W P P K M V V DM ++ D+ Sbjct: 721 TKKRGKRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVADMYTIADV 770 >At4g27370.1 68417.m03929 myosin family protein contains Pfam profiles: PF00063 myosin head (motor domain), PF00612 IQ calmodulin-binding motif Length = 1126 Score = 29.5 bits (63), Expect = 1.5 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +2 Query: 428 ENLIYTYTGSILVAVNPYXILPIY 499 ++LIY+ G +L+AVNP+ + IY Sbjct: 190 QDLIYSKAGPVLIAVNPFKNVQIY 213 Score = 28.7 bits (61), Expect = 2.6 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 346 VHGVEDMISLGDLHEAGILRNLLIRYN 426 + GVED+ L L+E +L NL +RY+ Sbjct: 163 LEGVEDLTQLSYLNEPSLLYNLRVRYS 189 >At3g49800.1 68416.m05445 BSD domain-containing protein contains Pfam profile PF03909: BSD domain Length = 428 Score = 28.7 bits (61), Expect = 2.6 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +1 Query: 262 RRIRVRDDDGNEQWLPPERRIKAMHATSVHGVEDM---ISLGDLHE 390 R I V+ DD + WL E + AT+ H V+D+ +S DL E Sbjct: 372 RVIDVQVDDDADDWLKDEDNAGTVSATTNHLVQDVDEDVSFSDLEE 417 >At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins - Arabidopsis thaliana Length = 906 Score = 27.5 bits (58), Expect = 6.0 Identities = 13/19 (68%), Positives = 13/19 (68%) Frame = -2 Query: 262 VPRRENTCSDRHVELPPRH 206 VP ENTCSDR VE P H Sbjct: 461 VPMEENTCSDR-VEAPNPH 478 >At2g27920.1 68415.m03384 serine carboxypeptidase S10 family protein similar to retinoid-inducible serine carboxypeptidase precursor (GI:15146429) [Mus musculus] Length = 461 Score = 27.5 bits (58), Expect = 6.0 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 241 TCSRGEGRRIRVRDDDGNEQWLPPERRIKA 330 +C+ GE + +R + DG+E W E R KA Sbjct: 16 SCTNGETKHVRKINSDGSEAWGYVEVRPKA 45 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,146,158 Number of Sequences: 28952 Number of extensions: 223445 Number of successful extensions: 573 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 573 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 993966856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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