Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1302
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    28   1.2  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    27   1.6  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   2.8  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   3.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.8  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   6.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   6.4  

>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 588 FLNMLYQKSGIPFTLGSI 535
           +LN+L +KSG+PF+LG +
Sbjct: 299 YLNILVKKSGMPFSLGVV 316


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 222 SDGIPT-PEC-SSRIRALRTLQKEFVDIEAKFYSEV 323
           S+G+   PE    RI  LR LQK + D+E++F  E+
Sbjct: 65  SEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKEL 100



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 545 NVKGIPDFWYNIFRNVSML 601
           + KGIP+FW    +NV  L
Sbjct: 160 DTKGIPEFWLTAMKNVLSL 178


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 542 PNVKGIPDFWYNIFRNVSML 601
           P+ KGIP+FW     NV ++
Sbjct: 161 PDPKGIPEFWLTCLHNVFLV 180


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 80  ERSTVPIFNISLSPPSKFSEKKDG 9
           ERS  P  ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 154  HLLKSGVTRNEMIAAITNRLHAEAMASLP 240
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 206 IAFMQKRWHPYPRMFVANPRLENSSEGVC 292
           IA    R HPY R     P+ +   +G+C
Sbjct: 667 IARRSNRHHPYSRPSSTRPQCQLEDQGIC 695


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 RIRDEHSGVGMPSLLHEGDL 203
           R+R+ H+G G    LHE D+
Sbjct: 46  RVRNSHNGFGFCEFLHEQDV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,454
Number of Sequences: 5004
Number of extensions: 44249
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)