BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1302 (601 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 29 2.2 06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 29 3.8 12_01_0109 + 853043-853426,853653-853787,853866-854138 28 5.0 12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467... 27 8.7 >05_06_0234 - 26602660-26602728,26602814-26602988,26603077-26603120, 26603204-26603381,26603468-26603652,26603737-26603801, 26603985-26604066,26604342-26604434,26605096-26605191, 26605312-26605355,26605467-26605530 Length = 364 Score = 29.5 bits (63), Expect = 2.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 240 PECSSRIRALRTLQKEFVDIEAKFYSE 320 P+ R+ LR +Q + D+EAKF+ E Sbjct: 55 PKVRKRVEVLREIQSQHDDLEAKFFEE 81 >06_03_0740 - 24006485-24006629,24006821-24006864,24006954-24007122, 24007226-24007413,24007572-24007634,24007992-24008084, 24009837-24009932,24010024-24010067,24010184-24010357, 24010764-24010974 Length = 408 Score = 28.7 bits (61), Expect = 3.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +2 Query: 533 PMDPNVKGIPDFWYNIFRNVSML 601 P+ KG+PDFW N +N +L Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEIL 224 >12_01_0109 + 853043-853426,853653-853787,853866-854138 Length = 263 Score = 28.3 bits (60), Expect = 5.0 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 235 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 104 G+P L GD+ + L+F G+ H T VAL F Q+P Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171 >12_02_0281 + 16744690-16744727,16744744-16745611,16746195-16746725, 16747737-16748549 Length = 749 Score = 27.5 bits (58), Expect = 8.7 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -3 Query: 257 SRRTFGGRDA-IASA*RRFVMAAIISLRVTPLF 162 S++ F +DA + R FVMA I+S+ V PLF Sbjct: 110 SQKIFDPQDAFLVRMNRLFVMACIVSVAVDPLF 142 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,879,138 Number of Sequences: 37544 Number of extensions: 296239 Number of successful extensions: 638 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 638 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1435654836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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