Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1302
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    29   2.2  
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    29   3.8  
12_01_0109 + 853043-853426,853653-853787,853866-854138                 28   5.0  
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467...    27   8.7  

>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 240 PECSSRIRALRTLQKEFVDIEAKFYSE 320
           P+   R+  LR +Q +  D+EAKF+ E
Sbjct: 55  PKVRKRVEVLREIQSQHDDLEAKFFEE 81


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 533 PMDPNVKGIPDFWYNIFRNVSML 601
           P+    KG+PDFW N  +N  +L
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEIL 224


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 235 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 104
           G+P L   GD+ + L+F  G+ H  T VAL   F       Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171


>12_02_0281 +
           16744690-16744727,16744744-16745611,16746195-16746725,
           16747737-16748549
          Length = 749

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 257 SRRTFGGRDA-IASA*RRFVMAAIISLRVTPLF 162
           S++ F  +DA +    R FVMA I+S+ V PLF
Sbjct: 110 SQKIFDPQDAFLVRMNRLFVMACIVSVAVDPLF 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,879,138
Number of Sequences: 37544
Number of extensions: 296239
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)