Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1302
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 31   0.71 
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             30   1.6  
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)              27   8.8  

>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 259 IRDEHSG-VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 140
           +R + SG V +PS +HE D   PL F +GS +  T + L H
Sbjct: 199 VRTQASGPVPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 398 TYEPNDDECLNPWRDDTEKEEL 463
           TYE  D+ C +PW+D ++K E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
 Frame = +2

Query: 386 IVNGTYEPNDDECLNPW--RDDTEKEELASGGTXXXXXXXXXXXXXXAI*PP-------M 538
           I +G  EP D+EC  P    D+ E EE                     I          +
Sbjct: 174 IASGGVEPTDEECRWPSDAEDEDEAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIETEQL 233

Query: 539 DPNVKGIPDFWYNIFRNVSML 601
             + KGIP+FW    +NV +L
Sbjct: 234 PEDTKGIPEFWLTAMKNVELL 254


>SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)
          Length = 675

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 88  RHQNVRRYPYLIFHSHRRQNFPKRKMA 8
           RHQ ++ +  L++H  +R NF +R  A
Sbjct: 217 RHQYIQEFGALVYHWRQRDNFCRRNNA 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,912
Number of Sequences: 59808
Number of extensions: 360571
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)